modENCODE was a 5year NHGRI funded project (2007-2012) to map the function of every base in the genomes of worms and flies characterizing positions of modified histones and other chromatin marks, origins of DNA replication, RNA transcripts and the transcription factor binding sites that control gene expression. Here we describe the Drosophila modENCODE datasets and how best to access and use them for genome wide and individual gene studies.
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http://dx.doi.org/10.1016/j.ymeth.2014.03.007 | DOI Listing |
NAR Genom Bioinform
December 2024
Institute of Human Genetics, Ulm University and Ulm University Medical Center, Albert-Einstein-Allee 11, Ulm 89081, Germany.
Illumina-based BeadChip arrays have revolutionized genome-wide DNA methylation profiling, pushing it into diagnostics. However, comprehensive quality assessment remains challenging within a wide range of available tissue materials and sample preparation methods. This study tackles two critical issues: differentiating between biological effects and technical artefacts in suboptimal quality samples and the impact of the first sample on the Illumina-like normalization algorithm.
View Article and Find Full Text PDFFront Genet
November 2024
Department of Gastroenterology, The First Affiliated Hospital, Gannan Medical University, Ganzhou, China.
Introduction: Cervical cancer remains a significant challenge in oncology with an escalating demand for novel therapeutic strategies that can navigate the complexities of its pathophysiology. This study elucidated the antineoplastic effects of cryptotanshinone, a derivative of danshen (), a herb widely utilized in traditional Chinese medicine practices.
Methods: Employing a comprehensive multi-omics approach, including transcriptomic, proteomic, and bioinformatics analyses, we investigated the potential effects of cryptotanshinone on cervical cancer through data mining and computational analysis.
J Biomol Struct Dyn
December 2024
Department of Biological Sciences, Birla Institute of Technology and Science, Pilani, Hyderabad, India.
Influenza A (H1N1) virus has been one of the most common threats to humankind since 1918. The viral genome is frequently substituted, leading to new strains and recurrent pandemics. Despite knowing the effects of single amino acid substitutions on individual viral proteins, the effects of collective substitutions on viral infection remain elusive.
View Article and Find Full Text PDFBiomolecules
November 2024
Institute for Clinical Chemistry, University Medical Center Göttingen, George-August-University, 37073 Göttingen, Germany.
We present KnowVID-19, a knowledge-based system that assists medical researchers and scientists in extracting targeted information quickly and efficiently from online medical literature repositories, such as PubMed, PubMed Central, and other biomedical sources. The system utilizes various open-source machine learning tools, such as GROBID, S2ORC, and BioC to streamline the processes of data extraction and data mining. Central to the functionality of KnowVID-19 is its keyword-based text classification process, which plays a pivotal role in organizing and categorizing the extracted information.
View Article and Find Full Text PDFISA Trans
November 2024
The State Key Laboratory of Satellite Navigation System and Equipment Technology, Shijiazhuang, China. Electronic address:
Accurate path-following control is crucial for Unmanned Ground Vehicles (UGV). However, influenced by external disturbances, UGV systems encounter challenges in meeting specific performance requirements, such as no overshoot and minimized chattering. In current sliding mode control (SMC) methods with disturbance observer (DOB), there still exists a serious chattering problem.
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