To understand mechanisms linking ecosystem processes and microbial diversity in freshwater ecosystems, bacterial productivity and the metacommunity dynamics of species sorting and mass effects were investigated in an 18 ha headwater lake in northern Alaska. On most sampling dates, the phylogenetic composition of bacterial communities in inflowing streams (inlets) was strikingly different than that in the lake and the outflowing stream (outlet) (16S DGGE fingerprinting), demonstrating the shift in composition that occurs as these communities transit the lake. Outlet and downstream communities were also more productive than inlet and upstream communities ((14)C-leucine incorporation). Inlet bacteria transplanted to the outlet stream in dialysis bags were equally or less productive than control bacteria, suggesting that the inlet bacteria are capable of growing under lake conditions, but do not remain abundant because of species sorting in the lake. Outlet bacteria (representative of epilimnetic bacteria) transplanted to the inlet stream were less productive than control bacteria, suggesting that lake bacteria are not as well adapted to growing under inlet conditions. Based on water density, inlet stream water and bacteria generally entered the lake at the base of the epilimnion. However, during low to medium flow in the inlet stream the residence time of the epilimnion was too long relative to bacterial doubling times for these allochthonous bacteria to have a mass effect on the composition of outlet bacteria. The highest community similarity between inlet and outlet bacteria was detected after a large rain event in 2003, with over 61% similarity (average non-storm similarities were 39 ± 8%). While mass effects may be important during large storm events, species sorting appears to be the predominant mechanism structuring bacterial communities within the lake, leading to the assembly of a lake community that has lost some ability to function in stream habitats.
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http://dx.doi.org/10.3389/fmicb.2014.00082 | DOI Listing |
Plant Physiol Biochem
January 2025
College of Food Science and Engineering, Bohai University, 121013, Jinzhou, PR China; National & Local Joint Engineering Research Center of Storage, Processing and Safety Control Technology for Fresh Agricultural and Aquatic Products, 121013, Jinzhou, PR China. Electronic address:
Significant losses of vegetables and fruits occur at multiple stages, including harvest, sorting, storage, and transportation, primarily due to mechanical damage, pathogen invasion, and the natural process of senescence. To mitigate postharvest decay and maintain superior quality of produce, conventional techniques such as low temperature storage and synthetic fungicide treatment are widely employed. Acibenzolar-S-methyl (ASM), an effective plant resistance inducers, has demonstrated its efficacy in protecting against a diverse range of fungal and bacterial pathogens.
View Article and Find Full Text PDFInsects
January 2025
Department of Agroecology and Forest Utilization, University of Rzeszów, 1a M.Ćwiklińskiej Str., 35-601 Rzeszów, Poland.
The insect fauna overwintering under the bark of tree trunks is very rarely studied. Thrips (Thysanoptera) associated with the plane tree ( x Mill. ex Münchh.
View Article and Find Full Text PDFMol Phylogenet Evol
January 2025
Key Laboratory of Tree Breeding and Cultivation, National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China. Electronic address:
Phylogenomic analyses have shown that reticulate evolution greatly affects the accuracy of phylogenetic inferences, and thus may challenge the authority of bifurcating phylogenetic trees. In this study, we re-evaluated the phylogenetic backbone of the genus Corylus based on complete taxon sampling and genomic data. We assembled 581 single-copy nuclear genes and whole plastomes from 64 genome resequencing datasets to elucidate the reticulate relationships within Corylus.
View Article and Find Full Text PDFEcol Evol
January 2025
State Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Institute of Hydrobiology Chinese Academy of Sciences Wuhan China.
The black bream () is an economically important species widely distributed in China, with its geographic populations potentially having undergone differentiations and local adaptations. In this study, we presented a chromosome-level genome assembly of this species and investigated genetic differentiations of its populations that are allopatric (the northern one) and sympatric (the Poyang Lake) to its kin species, the blunt-snout bream (), using whole genome resequencing analysis. The results showed that the genome size of black bream was 1.
View Article and Find Full Text PDFMycologia
January 2025
Crops Pathology and Genetics Research Unit, USDA-ARS Davis, Davis, California 95616.
Fungal trunk diseases are of major concern for tree fruit, nut, and grape growers throughout the world. These diseases include Eutypa dieback of grape, caused by , band canker of almond, caused by and , and twig and branch dieback of walnut, caused by , Botryosphaeria dieback of grape, caused by , and , and esca of grape, caused by and . Given the common occurrence of mixed infections, and the similar wood symptoms at the macroscopic level, species-specific detection tools are needed.
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