Betancur-R and Ortí (2014) offer a criticism of our recent examination of the monophyly of extant flatfishes (Pleuronectiformes; Campbell et al., 2013). We welcome this opportunity to examine and respond to the main issues presented in Betancur-R and Ortí (2014). Briefly, this debate centers on the question of whether or not analyses of the available evidence support a stable and confident conclusion regarding a sister group relationship between the two recognized pleuronectiform suborders: Psettodoidei (four species) and Pleuronectoidei (>700 species). In Campbell et al. (2013), we reported results based on sequences from six nuclear genes compatible with monophyly of Pleuronectoidei but not with that of Pleuronectiformes. In our analyses, the most closely related percomorph family to the Pleuronectoidei was resolved to be the Centropomidae. In Campbell et al. (2013), we also provided a critical review of the morphological evidence in favor flatfish monophyly showing that this evidence requires a careful re-examination where it concerns psettodoids. Here we present our perspective on the issues raised in Betancur-R and Ortí (2014).
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http://dx.doi.org/10.1016/j.ympev.2014.02.011 | DOI Listing |
Nat Ecol Evol
November 2024
Department of Biology, University of Oklahoma, Norman, OK, USA.
Colonization of a novel habitat is often followed by phenotypic diversification in the wake of ecological opportunity. However, some habitats should be inherently more constraining than others if the challenges of that environment offer few evolutionary solutions. We examined this push-and-pull on macroevolutionary diversification following habitat transitions in the anglerfishes (Lophiiformes).
View Article and Find Full Text PDFBiodivers Genomes
November 2024
Scripps Institution of Oceanography, University of California San Diego.
We present the complete genome sequences of Malacoctenus gilli, Malacoctenus tetranemus, Malacoctenus triangulates. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step.
View Article and Find Full Text PDFNat Commun
November 2024
Scripps Institution of Oceanography, University of California San Diego, 8622 Kennel Way, La Jolla, CA, 92037, USA.
Habitat transitions have shaped the evolutionary trajectory of many clades. Sea catfishes (Ariidae) have repeatedly undergone ecological transitions, including colonizing freshwaters from marine environments, leading to an adaptive radiation in Australia and New Guinea alongside non-radiating freshwater lineages elsewhere. Here, we generate and analyze one long-read reference genome and 66 short-read whole genome assemblies, in conjunction with genomic data for 54 additional species.
View Article and Find Full Text PDFBiodivers Genomes
November 2024
Scripps Institution of Oceanography.
We present the whole genome sequence of Haemulon aurolineatum. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR28478403) and assembled genome (JBCAUF000000000).
View Article and Find Full Text PDFBiodivers Genomes
May 2024
Department of Biology, University of Oklahoma.
Species in the genus are found primarily in coral reefs in the Caribbean Sea and the Gulf of Mexico, particularly around Florida and the Bahamas. They are a popular choice for hobbyist saltwater aquariums. Members of this genus are simultaneous hermaphrodites, as they have both male and female sexual organs at the same time as an adult.
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