Mapping the epigenetic basis of complex traits.

Science

Institut de Biologie de l'Ecole Normale Supérieure, Centre National de la Recherche Scientifique (CNRS), UMR 8197, Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris F-75005, France.

Published: March 2014

AI Article Synopsis

  • The study investigates how heritable epigenetic changes, specifically DNA methylation, influence complex traits in Arabidopsis plants.
  • It identifies specific regions in the genome that act as epigenetic quantitative trait loci (QTL(epi)), significantly contributing to the heritability of traits like flowering time and root length.
  • The findings suggest that these epigenetic variations can be maintained in natural populations and may play a role in evolution without changes to the underlying DNA sequence.

Article Abstract

Quantifying the impact of heritable epigenetic variation on complex traits is an emerging challenge in population genetics. Here, we analyze a population of isogenic Arabidopsis lines that segregate experimentally induced DNA methylation changes at hundreds of regions across the genome. We demonstrate that several of these differentially methylated regions (DMRs) act as bona fide epigenetic quantitative trait loci (QTL(epi)), accounting for 60 to 90% of the heritability for two complex traits, flowering time and primary root length. These QTL(epi) are reproducible and can be subjected to artificial selection. Many of the experimentally induced DMRs are also variable in natural populations of this species and may thus provide an epigenetic basis for Darwinian evolution independently of DNA sequence changes.

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1248127DOI Listing

Publication Analysis

Top Keywords

complex traits
12
epigenetic basis
8
experimentally induced
8
mapping epigenetic
4
basis complex
4
traits quantifying
4
quantifying impact
4
impact heritable
4
heritable epigenetic
4
epigenetic variation
4

Similar Publications

The Hepatincolaceae (Alphaproteobacteria) are a group of bacteria that inhabit the gut of arthropods and other ecdysozoans, associating extracellularly with microvilli. Previous phylogenetic studies, primarily single-gene analyses, suggested their relationship to the Holosporales, which includes intracellular bacteria in protist hosts. However, the genomics of Hepatincolaceae is still in its early stages.

View Article and Find Full Text PDF

The dysregulation of phosphatidylinositol 3-kinase (PI3K) signaling plays a pivotal role in driving neoplastic transformation by promoting uncontrolled cell survival and proliferation. This oncogenic activity is primarily caused by mutations that are frequently found in PI3K genes and constitutively activate the PI3K signaling pathway. However, tumorigenesis can also arise from nonmutated PI3K proteins adopting unique active conformations, further complicating the understanding of PI3K-driven cancers.

View Article and Find Full Text PDF

Asthma is a common complex disease with susceptibility defined through an interplay of genetic and environmental factors. Responsiveness to asthma treatment varies between individuals and is largely determined by genetic variability. The polygenic score (PGS) approach enables an individual risk of asthma and respective response to drug therapy.

View Article and Find Full Text PDF

The genus Vandenboschia exhibits significant diversity, driven by complex hybridization events and varying ploidy levels in the natural habitats of Korea, leads to misidentifications that obscure its true distribution and classification. To address this issue, the present study employed morphological, cytological, and genotype analyses to clarify the taxonomical circumscription and distribution patterns of the Vandenboschia radicans complex in Korea. The V.

View Article and Find Full Text PDF

metaGE: Investigating genotype x environment interactions through GWAS meta-analysis.

PLoS Genet

January 2025

Génétique Quantitative et Evolution - Le Moulon, INRAE, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, France.

Elucidating the genetic components of plant genotype-by-environment interactions is of key importance in the context of increasing climatic instability, diversification of agricultural practices and pest pressure due to phytosanitary treatment limitations. The genotypic response to environmental stresses can be investigated through multi-environment trials (METs). However, genome-wide association studies (GWAS) of MET data are significantly more complex than that of single environments.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!