The complete mitochondrial genome sequence of Onychostoma rara was determined to be 16,590 bp in length and contains 13 protein-coding genes (PCGs), 22 tRNA genes, large (rrnL) and small (rrnS) rRNA and the non-coding control region. Its total A + T content is 55.65%. We also analyzed the structure of control region, 6 CSBs (CSB-1, CSB-2, CSB-3, CSB-D, CSB-E and CSB-F) and 2 bp tandem repeat were detected.
Download full-text PDF |
Source |
|---|---|
| http://dx.doi.org/10.3109/19401736.2013.845768 | DOI Listing |
Publication Analysis
Top Keywords
Similar Publications
Toll-like receptor 21 in Labeo rohita recognizes double-stranded RNA and lipopolysaccharides by engaging the critical motifs in the LRR domain and gets activated against bacterial assaults.
Biochem Biophys Res Commun
December 2024
Immunology Laboratory, Fish Health Management Division (FHMD), ICAR-Central Institute of Freshwater Aquaculture (ICAR-CIFA), Kausalyaganga, Bhubaneswar, Odisha, 751002, India. Electronic address:
TLR (Toll-like receptor)-21 is a non-mammalian TLR and exhibits a unique function within the innate immune systems of fishes, birds, and amphibians. Despite its important role as PRR (pattern recognition receptor), research on TLR21 in many fish species, as well as in rohu (Labeo rohita), remains relatively limited. This article describes the molecular cloning of LrTLR21 (TLR21 in L.
View Article and Find Full Text PDFGenetic Diversity and Population Structure of in the Republic of Korea Revealed by Microsatellite Markers from Whole Genome Assembly.
Int J Mol Sci
June 2024
Animal & Plant Research Department, Nakdonggang National Institute of Biological Resources, Sangju 37242, Republic of Korea.
Article Synopsis
- This study is the first to analyze the genome of a wild population, focusing on developing and applying microsatellite markers to understand genetic structure.
- The genome assembly was high-quality, with 31,166 protein-coding genes identified, and revealed significant gene family expansions and contractions when compared to 10 other fish genomes.
- Population genetic analysis of 120 individuals showed variations in genetic diversity, resulting in the identification of three distinct populations based on allele counts and heterozygosity.
Objective: The objective of this study was to examine the genetic diversity within and between farmed populations of Onychostoma macrolepis, and to establish a foundation for enhancing the genetic resources of breeding groups through the introduction of new individuals and crossbreeding. A total of 49 individuals were subjected to sequencing using Specific-Locus Amplified Fragment Sequencing (SLAF-seq), one of the restriction site-associated DNA sequencing technologies. The single nucleotide polymorphisms(SNPs)were identified to conduct the analyzation of phylogeny population structure, principal component and genetic diversity.
View Article and Find Full Text PDFMolecular Identification of Acrossocheilus jishouensis (Teleostei: Cyprinidae) and Its Complete Mitochondrial Genome.
Biochem Genet
April 2024
Hunan Engineering Laboratory for Chinese Giant Salamander's Resource Protection and Comprehensive Utilization, and Key Laboratory of Hunan Forest Products and Chemical Industry Engineering, National and Local United Engineering Laboratory of Integrative Utilization Technology of Eucommia Ulmoides, Jishou University, Zhangjiajie, China.
Molecular identification, such as DNA barcoding, is a useful tool that is widely applied in distinguishing species. To identify the cyprinid Acrossocheilus jishouensis, which was previously known to be restricted to only its type locality, we conducted molecular identification of this species based on 23 samples in five localities. Molecular identification based on the mitochondrial COI gene sequence showed that the morphologically similar samples from the five populations were all A.
View Article and Find Full Text PDFThe Complete Mitochondrial Genome of the Freshwater Fish (Cypriniformes, Cyprinidae): Genome Characterization and Phylogenetic Analysis.
Genes (Basel)
June 2023
School of Life Sciences, Guizhou Normal University, Guiyang 550025, China.
In this study, we sequenced and characterized the complete mitochondrial genome (mitogenome) of . The mitogenome of was 16,602 bp in length with 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and a control region. The nucleotide composition of the mitogenome was 31.
View Article and Find Full Text PDFWant AI Summaries of new PubMed Abstracts delivered to your In-box?
Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!