Objective: Purpose of this work was to screen promoters which were induced by dissolved oxygen in Corynebacterium crenatum SYPA5-5.
Methods: Based on the genomic information of Corynebacterium, we identified target proteins which were the highest expression level of one copy of 27 known proteins from our earlier study. Based on the upstream sequence of the coding gene sequences, we amplified two promoters, named P-tkt and P-fum. The tac promoter of recombinant pDXW-8-cat and pDXW-8-gfp were replaced by the new promoters, and the recombinant plasmids were transformed into E. coli JM109 and C. crenatum SYPA5-5 respectively. At different dissolved oxygen level, we compared the function of promoters by the expression of chloramphenicol acetyltransferase (CAT) and green fluorescent protein (GFP).
Results: Results show that we identified 2 target proteins, which were transketolase and fumarate hydratase. At the high dissolved oxygen level the CAT activity of E. coli JM109/pDXW-Ptkt-cat and C. crenatum SYPA5-5/pDXW-Ptkt-cat were 3.032 U/mg and 1.987 U/mg, which were 2.8-fold and 3.2-fold than that in the low dissolved oxygen, respectively. We got similar results by using a 5-L fermentor.
Conclusion: The P-tkt promoter induced by high dissolved oxygen was suitable for fermentation to produce amino acids and beneficial to improve ability of synthesis and metabolism of amino acids at high dissolved oxygen level.
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J Environ Manage
January 2025
School of Energy & Environmental Engineering, Hebei University of Technology, Tianjin, 300401, China. Electronic address:
Photosynthetic bacteria (PSB) excel in wastewater treatment by removing pollutants and generating biomass but are challenging to optimize due to complex operational and environmental interactions. Neural Ordinary Differential Equations, Elastic Net, Stacking, and Categorical Boosting were applied as artificial intelligence methods to predict chemical oxygen demand (COD) removal efficiency, biomass productivity, biomass yield, and energy yield. Among these, the Stacking model demonstrated superior predictive performance across all targets.
View Article and Find Full Text PDFMicroorganisms
January 2025
State Environmental Protection Key Laboratory of Coastal Ecosystem, National Marine Environmental Monitoring Center, Dalian 116023, China.
As transitional ecosystems between land and sea, estuaries are characterized by a unique environment that supports complex and diverse microbial communities. A comprehensive analysis of microbial diversity and ecological processes at different trophic levels is crucial for understanding the ecological functions of estuarine ecosystems. In this study, we systematically analyzed the diversity patterns, community assembly, and environmental adaptability of bacterial and protist communities using high-throughput sequencing techniques.
View Article and Find Full Text PDFGenes (Basel)
December 2024
Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China.
Background: Hypoxia triggers stress, leading to significant alterations in gene expression patterns, which in turn affect fish's growth and development. Real-time quantitative PCR (RT-qPCR) is a pivotal technique for assessing changes in gene expression. However, its accuracy is highly contingent upon the stable expression of reference genes.
View Article and Find Full Text PDFBiomolecules
December 2024
Key Laboratory of Integrated Rice-Fish Farming Ecology, Ministry of Agriculture and Rural Affairs, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China.
Microorganisms, including bacteria, fungi, and protists, are key drivers in aquatic ecosystems, maintaining ecological balance and normal material circulation, playing vital roles in ecosystem functions and biogeochemical processes. To evaluate the environmental impact of different river crab polyculture practices, we set up two different river crab () polyculture practices: one where river crabs were cultured with mandarin fish (), silver carp (), and freshwater fish stone moroko (), and another where river crabs were cultured just with mandarin fish and silver carp. These two polyculture practices were referred to as PC and MC, respectively.
View Article and Find Full Text PDFEnviron Monit Assess
January 2025
Pathogen-Host-Environment Interactions Research Laboratory, Institute of Biology, College of Science, University of the Philippines Diliman, 1101, Quezon City, Philippines.
Microbial eukaryotes are vital to global microbial diversity, but there is limited information about their composition and sources in contaminated surface waters. This study examined the pathogens and potential sources of microbial eukaryotic communities in polluted sink environments using the 18S rDNA amplicon sequencing combined with the fast expectation-maximization for microbial source tracking (FEAST) program. Six sampling sites were selected along the Pasig-Marikina-San Juan (PAMARISAN) River System, representing different locations within the waterway and classified as sinks (n = 12), whereas animal fecal samples collected from various farms were classified as sources (n = 29).
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