The Carbohydrate-Active Enzymes database (CAZy; http://www.cazy.org) provides online and continuously updated access to a sequence-based family classification linking the sequence to the specificity and 3D structure of the enzymes that assemble, modify and breakdown oligo- and polysaccharides. Functional and 3D structural information is added and curated on a regular basis based on the available literature. In addition to the use of the database by enzymologists seeking curated information on CAZymes, the dissemination of a stable nomenclature for these enzymes is probably a major contribution of CAZy. The past few years have seen the expansion of the CAZy classification scheme to new families, the development of subfamilies in several families and the power of CAZy for the analysis of genomes and metagenomes. This article outlines the changes that have occurred in CAZy during the past 5 years and presents our novel effort to display the resolution and the carbohydrate ligands in crystallographic complexes of CAZymes.
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http://dx.doi.org/10.1093/nar/gkt1178 | DOI Listing |
J Fungi (Basel)
December 2024
Sanya Nanfan Research Institute, Hainan University, Sanya 572025, China.
A pathogen strain responsible for sweet potato stem and foliage scab disease was isolated from sweet potato stems. Through a phylogenetic analysis based on the rDNA internal transcribed spacer (ITS) region, combined with morphological methods, the isolated strain was identified as To comprehensively analyze the pathogenicity of the isolated strain from a genetic perspective, the whole-genome sequencing of HD-1 was performed using both the PacBio and Illumina platforms. The genome of HD-1 is about 26.
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December 2024
Leibniz Institute DSMZ, German Collection of Microorganisms and Cell Cultures, 38124 Braunschweig, Germany.
Helotiales, a diverse fungal order within Leotiomycetes (Ascomycota), comprises over 6000 species occupying varied ecological niches, from plant pathogens to saprobes and symbionts. Despite their importance, their genetic adaptations to temperature and environmental conditions are understudied. This study investigates temperature adaptations in infection genes and substrate degradation genes through a comparative genomics analysis of 129 Helotiales species, using the newly sequenced genomes of and .
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December 2024
College of Food Sciences & Technology, Shanghai Ocean University, Shanghai 201306, China.
is one of the widely produced edible fungi worldwide. It is rich in γ-aminobutyric acid (GABA), a non-protein amino acid with important physiological functions in humans. To investigate the functions of key genes in the GABA metabolic pathway of , we isolated the monokaryon from the factory-cultivated strain and then sequenced and assembled the genome using the PacBio Sequel and Illumina NovaSeq sequencing platforms.
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December 2024
College of Horticulture and Plant Protection, Inner Mongolia Agricultural University, Hohhot 010010, China.
, previously classified in the genus until 2007, is an attenuated pathogen known to provide cross-protection against wilt in various crops. To investigate the potential mechanisms underlying its reduced virulence, we conducted genome sequencing, annotation, and a comparative genome analysis of GnVn.1 (GnVn.
View Article and Find Full Text PDFJ Fungi (Basel)
November 2024
National Research Center for Edible Fungi Biotechnology and Engineering, Key Laboratory of Applied Mycological Resources and Utilization, Ministry of Agriculture, Shanghai Key Laboratory of Agricultural Genetics and Breeding, Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China.
In the industrial production of and , slow growth of the mother seed and insufficient hyphal vitality can significantly affect the cultivation process. To shorten the growth period on traditional PDA medium, two strains of and were cultured with different proportions of . and sclerotium powders added into the medium to investigate the effect on the mycelial growth.
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