Chromosomal location of retrotransposable REX 1 in the genomes in five (Teleostei: Characiformes.

Mob Genet Elements

Departamento Ciências Biológicas; Faculdade de Ciências; Universidade Estadual Paulista (UNESP); Campus de Bauru; Bauru, São Paulo Brazil.

Published: July 2013

Transposable elements are repetitive DNA sequences comprising a group of segments able to move and carry sequences within the genome. Studies involving comparative genomics have revealed that most vertebrates have different populations of transposable elements with significant differences among species of the same lineage. Few studies have been conducted in fish, the most diverse group of vertebrates, with the objective to locate different types of transposable elements. Therefore, this study proposed to map the retrotransposable element Rex1 applying Fluorescent in situ Hybridization (FISH) in five species of the genus ( and ). After the application of the Rex1 probe, scattered markings were found throughout the genome of analyzed species, and also the presence of small clusters located in the centromeric and telomeric regions coincident with the heterochromatin distribution pattern. This was the first description of the retrotransposable element Rex1 in genome seeking for a better understanding of the distribution pattern of these retrotransposons in the genome of teleost fish.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3812791PMC
http://dx.doi.org/10.4161/mge.25846DOI Listing

Publication Analysis

Top Keywords

transposable elements
12
retrotransposable element
8
element rex1
8
distribution pattern
8
chromosomal location
4
location retrotransposable
4
retrotransposable rex
4
rex genomes
4
genomes teleostei
4
teleostei characiformes
4

Similar Publications

Microevolutionary processes shape adaptive responses to heterogeneous environments, where these effects vary both among and within species. However, it remains largely unknown to which degree signatures of adaptation to environmental drivers can be detected based on the choice of spatial scale and genomic marker. We studied signatures of local adaptation across two levels of spatial extents, investigating complementary types of genomic variants-single-nucleotide polymorphisms (SNPs) and polymorphic transposable elements (TEs)-in populations of the alpine model plant species Arabis alpina .

View Article and Find Full Text PDF

MicroRNAs (miRNAs) are central players of the regulation of gene expression in Eukaryotes. The repertoires of miRNA genes vary drastically even among closely related species, indicating that they are evolutionarily labile. However, the processes by which they originate over the course of evolution and the nature of their progenitors across the genome remain poorly understood.

View Article and Find Full Text PDF

Pogo transposons provide tools to restrict cancer growth.

Mol Oncol

January 2025

Institut Curie, Inserm U932 - Immunity and Cancer, Paris, France.

Transposable elements provide material for novel gene formation. In particular, DNA transposons have contributed several essential genes involved in various physiological or pathological conditions. Here, we discuss recent findings by Tu et al.

View Article and Find Full Text PDF

Noncoding satellite DNA repeats are abundant at the pericentromeric heterochromatin of eukaryotic chromosomes. During interphase, sequence-specific DNA-binding proteins cluster these repeats from multiple chromosomes into nuclear foci known as chromocenters. Despite the pivotal role of chromocenters in cellular processes like genome encapsulation and gene repression, the associated proteins remain incompletely characterized.

View Article and Find Full Text PDF

Genomic imprinting is an epigenetic process that results in parent-of-origin effects on mammalian development and growth. Research on genomic imprinting in domesticated animals has lagged due to a primary focus on orthologs of mouse and human imprinted genes. This emphasis has limited the discovery of imprinted genes specific to livestock.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!