The impact of spatial scales and spatial smoothing on the outcome of bayesian spatial model.

PLoS One

Mathematical Sciences School, Queensland University of Technology, Brisbane, Queensland, Australia ; Cooperative Research Centre for Spatial Information, Melbourne, Victoria, Australia.

Published: July 2014

Discretization of a geographical region is quite common in spatial analysis. There have been few studies into the impact of different geographical scales on the outcome of spatial models for different spatial patterns. This study aims to investigate the impact of spatial scales and spatial smoothing on the outcomes of modelling spatial point-based data. Given a spatial point-based dataset (such as occurrence of a disease), we study the geographical variation of residual disease risk using regular grid cells. The individual disease risk is modelled using a logistic model with the inclusion of spatially unstructured and/or spatially structured random effects. Three spatial smoothness priors for the spatially structured component are employed in modelling, namely an intrinsic Gaussian Markov random field, a second-order random walk on a lattice, and a Gaussian field with Matérn correlation function. We investigate how changes in grid cell size affect model outcomes under different spatial structures and different smoothness priors for the spatial component. A realistic example (the Humberside data) is analyzed and a simulation study is described. Bayesian computation is carried out using an integrated nested Laplace approximation. The results suggest that the performance and predictive capacity of the spatial models improve as the grid cell size decreases for certain spatial structures. It also appears that different spatial smoothness priors should be applied for different patterns of point data.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795684PMC
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075957PLOS

Publication Analysis

Top Keywords

spatial
15
smoothness priors
12
impact spatial
8
spatial scales
8
scales spatial
8
spatial smoothing
8
spatial models
8
spatial point-based
8
disease risk
8
spatially structured
8

Similar Publications

Alzheimer's disease (AD) is a debilitating neurodegenerative disease that is marked by profound neurovascular dysfunction and significant cell-specific alterations in the brain vasculature. Recent advances in high throughput single-cell transcriptomics technology have enabled the study of the human brain vasculature at an unprecedented depth. Additionally, the understudied niche of cerebrovascular cells, such as endothelial and mural cells, and their subtypes have been scrutinized for understanding cellular and transcriptional heterogeneity in AD.

View Article and Find Full Text PDF

E. Coli cytotoxic necrotizing factor-1 promotes colorectal carcinogenesis by causing oxidative stress, DNA damage and intestinal permeability alteration.

J Exp Clin Cancer Res

January 2025

Department of Cardiovascular, Endocrine-Metabolic Diseases and Aging, Istituto Superiore di Sanità, Rome, Italy.

Background: Bacterial toxins are emerging as promising hallmarks of colorectal cancer (CRC) pathogenesis. In particular, Cytotoxic Necrotizing Factor 1 (CNF1) from E. coli deserves special consideration due to the significantly higher prevalence of this toxin gene in CRC patients with respect to healthy subjects, and to the numerous tumor-promoting effects that have been ascribed to the toxin in vitro.

View Article and Find Full Text PDF

Reference genome provide insights into sex determination of silver aworana (Osteoglossum bicirrhosum).

BMC Biol

January 2025

Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China.

Background: Silver arowana (Osteoglossum bicirrhosum) is a basal fish species with sexual monomorphism, while its sex determination mechanism has been poorly understood, posing a significant challenge to its captive breeding efforts.

Results: We constructed two high-quality chromosome-level genome assemblies for both female and male silver arowana, with scaffold N50 values over 10 Mb. Combining re-sequencing data of 109 individuals, we identified a female-specific region, which was localized in a non-coding region, i.

View Article and Find Full Text PDF

Molluscan marvels of Gujarat: exploring species distribution and conservation strategies using a spatial approach.

Environ Sci Pollut Res Int

January 2025

Division of Marine and Freshwater Biology, Department of Zoology, Faculty of Science, The Maharaja Sayajirao University of Baroda, Vadodara, Gujarat, India.

This study delves into the Molluscan diversity along the Gujarat coast, India, focusing on the distribution and habitat suitability of four key species: Cerithium caeruleum, Lunella coronata, Peronia verruculata, and Trochus radiatus. Utilizing species distribution models (SDMs) integrated with machine learning algorithms, we assessed the impact of environmental variables on the distribution patterns of these molluscs. Our findings reveal a nuanced understanding of habitat preferences, highlighting the critical roles of salinity, chlorophyll concentration, and water temperature.

View Article and Find Full Text PDF

Purpose Of The Review: Clinical trials suggest that dietary anthocyanins may enhance cognitive function. This systematic literature review and meta-analysis aimed to identify the effect of anthocyanin on cognition and mood in adults.

Recent Findings: Using a random-effects model, Hedge's g scores were calculated to estimate the effect size.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!