Currently, there is an urgent need to develop a technology for extracting drug information automatically from biomedical texts, and drug name recognition is an essential prerequisite for extracting drug information. This article presents a machine-learning-based approach to recognize drug names in biomedical texts. In this approach, a drug name dictionary is first constructed with the external resource of DrugBank and PubMed. Then a semi-supervised learning method, feature coupling generalization, is used to filter this dictionary. Finally, the dictionary look-up and the condition random field method are combined to recognize drug names. Experimental results show that our approach achieves an F-score of 92.54% on the test set of DDIExtraction2011.
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http://dx.doi.org/10.1016/j.drudis.2013.10.006 | DOI Listing |
J Biomed Inform
January 2025
University of Manchester, United Kingdom.
Objective: Extracting named entities from clinical free-text presents unique challenges, particularly when dealing with discontinuous entities-mentions that are separated by unrelated words. Traditional NER methods often struggle to accurately identify these entities, prompting the development of specialised computational solutions. This paper systematically reviews and presents the methodologies developed for Discontinuous Named Entity Recognition in clinical texts, highlighting their effectiveness and the challenges they face.
View Article and Find Full Text PDFLancet Child Adolesc Health
February 2025
Stellenbosch University, Faculty of Medicine and Health Sciences, Department of Paediatrics and Child Health, Desmond Tutu TB Centre, Tygerberg, South Africa.
Background: There are few data on the treatment of children and adolescents with multidrug-resistant (MDR) or rifampicin-resistant (RR) tuberculosis, especially with more recently available drugs and regimens. We aimed to describe the clinical and treatment characteristics and their associations with treatment outcomes in this susceptible population.
Methods: We conducted a systematic review and individual participant data meta-analysis.
Proc (IEEE Conf Multimed Inf Process Retr)
August 2024
Department of Computer Science, University of Kentucky, Lexington, KY, USA.
Despite the prevalence of images and texts in machine learning, tabular data remains widely used across various domains. Existing deep learning models, such as convolutional neural networks and transformers, perform well however demand extensive preprocessing and tuning limiting accessibility and scalability. This work introduces an innovative approach based on a structured state-space model (SSM), MambaTab, for tabular data.
View Article and Find Full Text PDFGraefes Arch Clin Exp Ophthalmol
January 2025
Radiation, Chemicals, Climate and Environmental Hazards Directorate, UK Health Security Agency, Didcot, UK.
Purpose: Myopia (short-sightedness) is an emerging WHO priority eye disease. Rise in prevalence and severity are driven by changes in lifestyle and environment of children and young people (CYP), including less time spent in bright daylight and more time spent on near-vision activities. We aimed to systematically map the literature describing direct, objective measurements of the visual environment of CYP.
View Article and Find Full Text PDFJ Tradit Complement Med
January 2025
Department of Chinese Pharmaceutical Sciences and Chinese Medicine Resources, College of Chinese Medicine, China Medical University, Taichung, 40402, Taiwan.
The medicinal value of herbal products is often rooted in their "traditional" use, recontextualized by modern biomedical research granting them certain medical uses. L. (Asteraceae), native to Mexico, exemplifies such historical developments of a species that played a key role in developing a major pharmacologically active compound - lutein.
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