In the past decades, with the rapid development of high-throughput technologies, biology research has generated an unprecedented amount of data. In order to store and process such a great amount of data, cloud computing and MapReduce were applied to many fields of bioinformatics. In this paper, we first introduce the basic concepts of cloud computing and MapReduce, and their applications in bioinformatics. We then highlight some problems challenging the applications of cloud computing and MapReduce to bioinformatics. Finally, we give a brief guideline for using cloud computing in biology research.
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http://dx.doi.org/10.1142/S0219720013300025 | DOI Listing |
BMC Bioinformatics
January 2025
Solu Healthcare Oy, Kalevankatu 31 A 13, 00100, Helsinki, Finland.
Background: Genomic surveillance is extensively used for tracking public health outbreaks and healthcare-associated pathogens. Despite advancements in bioinformatics pipelines, there are still significant challenges in terms of infrastructure, expertise, and security when it comes to continuous surveillance. The existing pipelines often require the user to set up and manage their own infrastructure and are not designed for continuous surveillance that demands integration of new and regularly generated sequencing data with previous analyses.
View Article and Find Full Text PDFUrban Inform
January 2025
IVL Swedish Environmental Research Institute LTD., PO Box 530 21, SE-400 14 Gothenburg, Sweden.
In response to the demand for advanced tools in environmental monitoring and policy formulation, this work leverages modern software and big data technologies to enhance novel road transport emissions research. This is achieved by making data and analysis tools more widely available and customisable so users can tailor outputs to their requirements. Through the novel combination of vehicle emissions remote sensing and cloud computing methodologies, these developments aim to reduce the barriers to understanding real-driving emissions (RDE) across urban environments.
View Article and Find Full Text PDFSensors (Basel)
December 2024
School of Computer Science and Engineering, University of New South Wales, Sydney, NSW 2052, Australia.
Most current research in cloud forensics is focused on tackling the challenges encountered by forensic investigators in identifying and recovering artifacts from cloud devices. These challenges arise from the diverse array of cloud service providers as each has its distinct rules, guidelines, and requirements. This research proposes an investigation technique for identifying and locating data remnants in two main stages: artefact collection and evidence identification.
View Article and Find Full Text PDFSensors (Basel)
December 2024
Department of Computer Science & Engineering, Sungkyunkwan University, Suwon 16419, Republic of Korea.
The Internet of Things (IoT) has seen remarkable advancements in recent years, leading to a paradigm shift in the digital landscape. However, these technological strides have introduced new challenges, particularly in cybersecurity. IoT devices, inherently connected to the internet, are susceptible to various forms of attacks.
View Article and Find Full Text PDFPhysiol Meas
January 2025
University of Duisburg-Essen, Bismarckstr. 81 (BB), Duisburg, 47057, GERMANY.
Objective: In recent years, wearable devices such as smartwatches and smart patches have revolutionized biosignal acquisition and analysis, particularly for monitoring electrocardiography (ECG). However, the limited power supply of these devices often precludes real-time data analysis on the patch itself.
Approach: This paper introduces a novel Python package, tinyHLS (High Level Synthesis), designed
to address these challenges by converting Python-based AI models into platform-independent hardware description language (HDL) code accelerators.
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