A latent parameter node-centric model for spatial networks.

PLoS One

Department of Computer Science, University of California Santa Barbara, Santa Barbara, California, United States of America.

Published: July 2014

Spatial networks, in which nodes and edges are embedded in space, play a vital role in the study of complex systems. For example, many social networks attach geo-location information to each user, allowing the study of not only topological interactions between users, but spatial interactions as well. The defining property of spatial networks is that edge distances are associated with a cost, which may subtly influence the topology of the network. However, the cost function over distance is rarely known, thus developing a model of connections in spatial networks is a difficult task. In this paper, we introduce a novel model for capturing the interaction between spatial effects and network structure. Our approach represents a unique combination of ideas from latent variable statistical models and spatial network modeling. In contrast to previous work, we view the ability to form long/short-distance connections to be dependent on the individual nodes involved. For example, a node's specific surroundings (e.g. network structure and node density) may make it more likely to form a long distance link than other nodes with the same degree. To capture this information, we attach a latent variable to each node which represents a node's spatial reach. These variables are inferred from the network structure using a Markov Chain Monte Carlo algorithm. We experimentally evaluate our proposed model on 4 different types of real-world spatial networks (e.g. transportation, biological, infrastructure, and social). We apply our model to the task of link prediction and achieve up to a 35% improvement over previous approaches in terms of the area under the ROC curve. Additionally, we show that our model is particularly helpful for predicting links between nodes with low degrees. In these cases, we see much larger improvements over previous models.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3781076PMC
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0071293PLOS

Publication Analysis

Top Keywords

spatial networks
20
network structure
12
spatial
9
latent variable
8
model
6
networks
6
network
5
latent parameter
4
parameter node-centric
4
node-centric model
4

Similar Publications

Background: Peripheral nerve sheath tumors (PNSTs) encompass entities with different cellular differentiation and degrees of malignancy. Spatial heterogeneity complicates diagnosis and grading of PNSTs in some cases. In malignant PNST (MPNST) for example, single cell sequencing data has shown dissimilar differentiation states of tumor cells.

View Article and Find Full Text PDF

Organizational Principles of the Primate Cerebral Cortex at the Single-Cell Level.

Adv Sci (Weinh)

January 2025

CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, 200031, China.

The primate cerebral cortex, the major organ for cognition, consists of an immense number of neurons. However, the organizational principles governing these neurons remain unclear. By accessing the single-cell spatial transcriptome of over 25 million neuron cells across the entire macaque cortex, it is discovered that the distribution of neurons within cortical layers is highly non-random.

View Article and Find Full Text PDF

Traumatic brain injury is widely viewed as a risk factor for dementia, but the biological mechanisms underlying this association are still unclear. In previous studies, traumatic brain injury has been associated with the hallmark pathologies of Alzheimer's disease, i.e.

View Article and Find Full Text PDF

A systematic review of Machine Learning and Deep Learning approaches in Mexico: challenges and opportunities.

Front Artif Intell

January 2025

CONAHCYT-Instituto Potosino de Investigación Científica y Tecnológica, A.C. División de Geociencias Aplicadas, San Luis Potosí, Mexico.

This systematic review provides a state-of-art of Artificial Intelligence (AI) models such as Machine Learning (ML) and Deep Learning (DL) development and its applications in Mexico in diverse fields. These models are recognized as powerful tools in many fields due to their capability to carry out several tasks such as forecasting, image classification, recognition, natural language processing, machine translation, etc. This review article aimed to provide comprehensive information on the Machine Learning and Deep Learning algorithms applied in Mexico.

View Article and Find Full Text PDF

Deep learning has revolutionized electroencephalograph (EEG) decoding, with convolutional neural networks (CNNs) being a predominant tool. However, CNNs struggle with long-term dependencies in sequential EEG data. Models like long short-term memory and transformers improve performance but still face challenges of computational efficiency and long sequences.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!