We derive a continuum model, called the Poisson-Fermi equation, of biological calcium channels (of cardiac muscle, for example) designed to deal with crowded systems in which ionic species and side chains nearly fill space. The model is evaluated in three dimensions. It includes steric and correlation effects and is derived from classical hard-sphere lattice models of configurational entropy of finite size ions and solvent molecules. The maximum allowable close packing (saturation) condition is satisfied by all ionic species with different sizes and valences in a channel system, as shown theoretically and numerically. Unphysical overcrowding ("divergence") predicted by the Gouy-Chapman diffuse model (produced by a Boltzmann distribution of point charges with large potentials) does not occur with the Fermi-like distribution. Using probability theory, we also provide an analytical description of the implicit dielectric model of ionic solutions that gives rise to a global and a local formula for the chemical potential. In this primitive model, ions are treated as hard spheres and solvent molecules are described as a dielectric medium. The Poisson-Fermi equation is a local formula dealing with different correlations at different places. The correlation effects are apparent in our numerical results. Our results show variations of dielectric permittivity from bath to channel pore described by a new dielectric function derived as an output from the Poisson-Fermi analysis. The results are consistent with existing theoretical and experimental results. The binding curve of Poisson-Fermi is shown to match Monte Carlo data and illustrates the anomalous mole fraction effect of calcium channels, an effective blockage of permeation of sodium ions by a tiny concentration (or number) of calcium ions.
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Nat Comput Sci
March 2021
Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI, USA.
Models of the electrical double layer (EDL) at electrode/liquid-electrolyte interfaces no longer hold for all-solid-state electrochemistry. Here we show a more general model for the EDL at a solid-state electrochemical interface based on the Poisson-Fermi-Dirac equation. By combining this model with density functional theory predictions, the interconnected electronic and ionic degrees of freedom in all-solid-state batteries, including the electronic band bending and defect concentration variation in the space-charge layer, are captured self-consistently.
View Article and Find Full Text PDFPhys Rev Lett
May 2018
Department of Physics, North Dakota State University, Fargo, North Dakota 58108-6050, USA.
Mean-field electrostatics is used to calculate the bending moduli of an electric double layer for fixed surface charge density of a macroion in a symmetric 1∶1 electrolyte. The resulting expressions for bending stiffness, Gaussian modulus, and spontaneous curvature refer to a general underlying equation of state of the electrolyte, subject to a local density approximation and the absence of dipole and higher-order fields. We present results for selected applications: the lattice-gas Poisson-Fermi model with and without asymmetric ion sizes, and the Poisson-Carnahan-Starling model.
View Article and Find Full Text PDFJ Chem Phys
August 2014
Department of Molecular Biophysics and Physiology, Rush University, Chicago, Illinois 60612, USA.
The anomalous mole fraction effect of L-type calcium channels is analyzed using a Fermi like distribution with the experimental data of Almers and McCleskey [J. Physiol. 353, 585 (1984)] and the atomic resolution model of Lipkind and Fozzard [Biochemistry 40, 6786 (2001)] of the selectivity filter of the channel.
View Article and Find Full Text PDFJ Phys Chem B
October 2013
Department of Applied Mathematics, National Hsinchu University of Education, Hsinchu 300, Taiwan.
We derive a continuum model, called the Poisson-Fermi equation, of biological calcium channels (of cardiac muscle, for example) designed to deal with crowded systems in which ionic species and side chains nearly fill space. The model is evaluated in three dimensions. It includes steric and correlation effects and is derived from classical hard-sphere lattice models of configurational entropy of finite size ions and solvent molecules.
View Article and Find Full Text PDFJ Comput Chem
April 2012
Continuum Dynamics, Inc., 34 Lexington Ave, Ewing, NJ 08618, USA.
The nonlinear Poisson-Boltzmann equation (PBE) governing biomolecular electrostatics neglects ion size and ion correlation effects, and recent research activity has focused on accounting for these effects to achieve better physical modeling realism. Here, attention is focused on the comparatively simpler challenge of addressing ion size effects within a continuum-based solvent modeling framework. Prior works by Borukhov et al.
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