The heme protein cytochrome c adsorbed to a two-layer gold surface modified with a self-assembled monolayer of 2-mercaptoethanol was analyzed using a two-dimensional (2D) heterospectral correlation analysis that combined surface-enhanced infrared absorption spectroscopy (SEIRAS) and surface-enhanced Raman spectroscopy (SERS). Stepwise increasing electric potentials were applied to alter the redox state of the protein and to induce conformational changes within the protein backbone. We demonstrate herein that 2D heterospectral correlation analysis is a particularly suitable and useful technique for the study of heme-containing proteins as the two spectroscopies address different portions of the protein. Thus, by correlating SERS and SEIRAS data in a 2D plot, we can obtain a deeper understanding of the conformational changes occurring at the redox center and in the supporting protein backbone during the electron transfer process. The correlation analyses are complemented by molecular dynamics calculations to explore the intramolecular interactions.
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http://dx.doi.org/10.1021/jp404573q | DOI Listing |
Molecules
November 2023
Department of Chemistry, Institute for Molecular Science and Fusion Technology, Kangwon Radiation Convergence Research Support Center, Kangwon National University, Chuncheon 24341, Republic of Korea.
In this study, mineral components extracted during the desalination process were concentrated and dried, and then identified using energy dispersive X-ray spectroscopy (EDS), X-ray diffraction (XRD), infrared (IR), and Raman spectroscopy. For detailed identification, two-dimensional correlation spectroscopy (2D-COS) was also applied to the XRD patterns, IR spectra, and Raman spectra of the minerals obtained from each desalination step. The EDS results confirm the presence of seawater minerals rich in Na ions in the first and second extracts, Ca ions are present only in these stages, and Mg ions are abundant in the third and final extracts.
View Article and Find Full Text PDFEnviron Pollut
September 2023
School of Environment, Nanjing Normal University, Nanjing, 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Jiangsu Engineering Lab of Water and Soil Eco-remediation, Nanjing, 210023, China.
Copper-based algicides have been widely used to suppress algae blooms; however, the release of algal organic matter (AOM) on account of cell lysis may cause significant changes in the mitigation, transformation, and bioavailability of Cu(II). In the present work, the binding characteristics of Cu(II) with AOM were explored via combinative characterization methods, such as high-performance size exclusion chromatography, differential absorption spectra analysis, and joint applications of two-dimensional correlation spectroscopy (2D-COS), as well as heterospectral 2D-COS and moving window 2D-COS analyses of UV, synchronous fluorescence, and FTIR spectra. Carboxyl groups displayed a preferential interaction to Cu(II) binding, followed by polysaccharides.
View Article and Find Full Text PDFChemosphere
March 2023
Key Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu, 610041, China. Electronic address:
In this work, uranium (U(VI)) binding characteristics of the intrinsic dissolved organic matters (DOM) from the biochars prepared under thermal air oxidation (TAO) and non-TAO conditions were studied using synchronous fluorescence spectra (SFS) and Fourier transform infrared (FTIR) in conjunction with the general two-dimensional correlation spectroscopy (2D-COS), heterospectral 2D-COS and moving-window (MW) 2D-COS. The chemical compositions of the intrinsic DOMs from biochars with/without TAO were investigated by Fourier transform-ion cyclotron resonance mass spectrometry (FT-ICR MS). Results showed that the preferential binding of U(VI) to functional groups followed the order: 937 (carboxyl γ), 981 (carboxyl γ), 1511 (aromatic v), 1108 (esters or ethers v), 1282 (esters or carboxyl v), 1698 (saturated carboxylic acid or ketone v) cm for biochar DOM after TAO (OB600), and 937 (carboxyl γ), 1484 (lipids δ or phenolic v), 1201 (esters or carboxyl v), 1112 (esters or ethers v), 1706 (saturated aldehyde, carboxylic acid or ketone v), 1060 (phenolic, esters or ethers v), 1014 (phenolic, esters or ethers v) cm for the pristine biochar (B600).
View Article and Find Full Text PDFJ Hazard Mater
August 2022
Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou, China. Electronic address:
Dissolved organic matter released from biochar (biochar-derived DOM, BDOM) could dominate the environmental behavior and fate of trace metals by forming BDOM-metal complexes. Here general, heterospectral as well as moving-window (MW) two-dimensional correlation spectroscopy (2DCOS) analyses of synchronous fluorescence and Fourier transform infrared spectra were employed to explore the heterogeneous binding characteristics between sludge BDOM and Cu(II). The results revealed that Cu-BDOM binding first occurred in the fulvic-like (368-380 nm), then humic-like (428 nm) fluorescent fractions, followed by infrared groups of phenolic hydroxyl groups, carboxylate, COH of polysaccharide groups, CC of aromatic carbon, CH of aliphatics and COC of aliphatic ethers.
View Article and Find Full Text PDFPhys Chem Chem Phys
March 2022
Department of Pharmacy, University of Naples Federico II, Naples, I-80131, Italy.
The promoter regions of important oncogenes such as and contain GC-rich sequences that can form distinctive noncanonical DNA structures involved in the regulation of transcription: G-quadruplexes on the G-rich strand and i-motifs on the C-rich strand. Interestingly, and promoter i-motifs are highly dynamic in nature and exist in a pH-dependent equilibrium with hairpin and even with hybrid i-motif/hairpin species. Herein, the effects of pH and presence of cell-mimicking molecular crowding conditions on conformational equilibria of the and i-motif-forming sequences were investigated by ultraviolet resonance Raman (UVRR) and circular dichroism (CD) spectroscopies.
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