The targets of CAPRI rounds 20-27.

Proteins

IBBMC, CNRS UMR 8619, Bât. 430, Université Paris-Sud, Orsay, 91405, France.

Published: December 2013

Eight CAPRI prediction rounds with a total of 15 targets were held in the years 2010-2012. Only five of the targets were protein assemblies comparable with those of earlier CAPRI rounds. In one target, the solvent positions at the interface had to be predicted; another was a protein-polysaccharide complex. The remainders were designed complexes issued from protein engineering experiments, and the prediction concerned either their structure or the binding affinity of the designed ligand. Affinity prediction was a new experiment in CAPRI, and a challenge for its participants. It pushed the community into developing novel procedures and score functions that will improve the performance of docking methods, help designing binders, and yield better structure-based estimates of the binding free energy of natural assemblies.

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http://dx.doi.org/10.1002/prot.24375DOI Listing

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