The evolution of the marine communities along the Pacific coast of Central America, may have changed in response to the formation of the Isthmus of Panama. To evaluate the effect of the Aseismic Cocos Ridge (DAC) subduction on the marine benthic communities, we reconstructed benthic assemblages from Neogene fossiliferous formations in Burica and Nicoya peninsulas of Panama and Costa Rica. Paleoecological and paleoenvironmental conditions were reconstructed by comparing community structure from bulk fossil samples with dredge collections from modern Tropical American seas, using principal component analysis. Our results indicate that during the early Pliocene, before the closing of the Isthmus, some oceanic islands existed with moderate upwelling in the Burica region. After the closure, during the late Pliocene and early Pleistocene the collision of the DAC caused an uplift of the seafloor, where water depth of 2 300m became shallow waters of less than 40m depth. Meanwhile, upwelling intensified in the open ocean the uplift that had formed small islands in coastal areas of Burica, creating protected areas and limiting the upwelling effect that was given in open ocean. The subduction of the DAC continued until the islands were joined to the mainland and gradually disappeared, allowing the return of the upwelling. During the middle Pleistocene a second process of accelerated uplift with speeds of 8m/1000 years provoked again the elevation of the seafloor and later the elevation of the Talamanca Range. The new range formed a barrier that blocked the passage of the Trade winds, created new ecological conditions and optimized and allowed the growth of the best coral reefs in the coasts of the tropical Eastern Pacific (POT) between Panama and Costa Rica.

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