MHF1 and MHF2 are histone-fold-containing FANCM-associated proteins. FANCM is a Fanconi anemia (FA) complementation group protein. We previously obtained high-resolution structures of MHF1-MHF2 (MHF) and MHF in complex with a fragment of FANCM (MHF-FANCM-F). Here, we use small angle X-ray scattering (SAXS) to investigate the solution behaviors of these protein complexes. In combination with crystallographic data, the results of the SAXS study reveal that a long, positively charged patch exposed on the surface of the MHF complex plays a critical role in double-stranded DNA (dsDNA) binding.
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http://dx.doi.org/10.1016/j.febslet.2013.07.022 | DOI Listing |
Macromol Rapid Commun
December 2024
School of Mathematical and Physical Sciences, University of Sheffield, Dainton Building, Sheffield, S3 7HF, UK.
Natural single-chain nanoparticles (SCNPs) such as proteins have inspired research into the formation and application of synthetic SCNPs. Although the latter can mimic general aspects of the self-assembly behavior of their biological counterparts, these systems remain relatively understudied. In this respect, a systematic series of amphiphilic statistical copolymers (ASC) of different molecular weights, with a hydrophilic comonomer (methacrylic acid) and varying hydrophobic comonomer to encompass methacrylates of different hydrophobicity, are synthesized.
View Article and Find Full Text PDFJ Colloid Interface Sci
December 2024
Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes 748, São Paulo 05508-000, Brazil. Electronic address:
In this study, kapok fiber (KF) a hollow and hydrophobic fiber, was modified with cetyltrimethylammonium bromide (CTAB) or cetylpyridinium chloride (CPC), rendering adsorbed amount of ∼0.75 × 10 mol/g. Small-angle X-ray scattering (SAXS) measurements of dry KF/CTAB and KF/CPC evidenced a periodic distance of ∼2.
View Article and Find Full Text PDFBiophys J
December 2024
Institute for Integrated Radiation and Nuclear Science, Kyoto University, Kumatori, Sennan-gun, Osaka 590-0494 Japan. Electronic address:
Intrinsically disordered proteins (IDPs) show structural changes stimulated by changes in external conditions. This study aims to reveal the temperature dependence of the structure and dynamics of the intrinsically disordered region of Hef, one of the typical IDPs, using an integrative approach. Small-angle X-ray scattering (SAXS) and circular dichroism (CD) studies revealed that the radius of gyration and ellipticity at 222 nm remained constant up to 313-323 K, followed by a decline above this temperature range.
View Article and Find Full Text PDFActa Crystallogr F Struct Biol Commun
January 2025
Unité de Glycobiologie Structurale et Fonctionnelle (UGSF), UMR 8576 CNRS and University of Lille, Villeneuve d'Ascq, France.
Monoclonal antibodies recognizing nonprotein antigens remain largely underrepresented in our understanding of the molecular repertoire of innate and adaptive immunity. One such antibody is Mannitou, a murine IgM that recognizes paucimannosidic glycans. In this work, we report the production and purification of the recombinant antigen-binding fragment (Fab) of Mannitou IgM (Mannitou Fab) and employ a combination of biochemical and biophysical approaches to obtain its initial structural characterization.
View Article and Find Full Text PDFJ Mol Graph Model
December 2024
CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411008, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India. Electronic address:
Multi-scale models in which varying resolutions are considered in a single molecular dynamics simulation setup are gaining importance in integrative modeling. However, combining atomistic and coarse-grain resolutions, especially for coarse-grain force fields derived from top-down approaches, have not been well explored. In this study, we have implemented and tested a dual-resolution simulation approach to model globular proteins in atomistic detail (represented by the CHARMM36 model) with the surrounding solvent in Martini2 coarse-grain detail.
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