Chromatin organization and global regulation of Hox gene clusters.

Philos Trans R Soc Lond B Biol Sci

National Research Centre 'Frontiers in Genetics', School of Life Sciences, Ecole Polytechnique Fédérale, Lausanne, Switzerland.

Published: December 2013

During development, a properly coordinated expression of Hox genes, within their different genomic clusters is critical for patterning the body plans of many animals with a bilateral symmetry. The fascinating correspondence between the topological organization of Hox clusters and their transcriptional activation in space and time has served as a paradigm for understanding the relationships between genome structure and function. Here, we review some recent observations, which revealed highly dynamic changes in the structure of chromatin at Hox clusters, in parallel with their activation during embryonic development. We discuss the relevance of these findings for our understanding of large-scale gene regulation.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3682730PMC
http://dx.doi.org/10.1098/rstb.2012.0367DOI Listing

Publication Analysis

Top Keywords

hox clusters
8
chromatin organization
4
organization global
4
global regulation
4
hox
4
regulation hox
4
hox gene
4
clusters
4
gene clusters
4
clusters development
4

Similar Publications

The genetic mechanisms underlying striking axial patterning changes in wild species are still largely unknown. Previous studies have shown that fish, commonly known as fourspine sticklebacks, have evolved multiple different axial patterns in wild populations. Here, we revisit classic locations in Nova Scotia, Canada, where both high-spined and low-spined morphs are particularly common.

View Article and Find Full Text PDF

Maple syrup urine disease (MSUD) is a rare inherited metabolic disorder characterized by deficient activity of the branched-chain alpha-ketoacid dehydrogenase (BCKDH) complex, required to metabolize the amino acids leucine, isoleucine, and valine. Despite its profound metabolic implications, the molecular alterations underlying this metabolic impairment had not yet been completely elucidated. We performed a comprehensive multi-omics integration analysis, including genomic, epigenomic, and transcriptomic data from fibroblasts derived from a cohort of MSUD patients and unaffected controls to genetically characterize an MSUD case and to unravel the MSUD pathophysiology.

View Article and Find Full Text PDF

Acute myeloid leukemia (AML) is characterized by impaired differentiation of myeloid cells leading to hematopoietic failure. Despite advances, the molecular mechanisms driving AML remain incompletely understood, limiting the identification and targeting of critical vulnerabilities in leukemic cells. Homeobox (HOX) genes, encoding transcription factors essential for myeloid and lymphoid differentiation, are distributed across four clusters: HOXA (chromosome 7), HOXB (chromosome 17), HOXC (chromosome 12), and HOXD (chromosome 2).

View Article and Find Full Text PDF

Hox genes are central to metazoan body plan formation, patterning and evolution, playing a critical role in cell fate decisions early in embryonic development in invertebrates and vertebrates. While the archetypical Hox gene cluster consists of members of nine ortholog groups (HOX1-HOX9), arrayed in close linkage in the order in which they have their anterior-posterior patterning effects, nematode Hox gene sets do not fit this model. The Caenorhabditis elegans Hox gene set is not clustered and contains only six Hox genes from four of the ancestral groups.

View Article and Find Full Text PDF

Expression Is an Independent Prognostic Biomarker in Esophageal Squamous Cell Carcinoma.

Genes (Basel)

November 2024

Laboratório de Toxicologia e Biologia Molecular, Departamento de Bioquímica, Universidade do Estado do Rio de Janeiro (UERJ), Rio de Janeiro 20550-013, RJ, Brazil.

Article Synopsis
  • Homeobox genes are important for organ development and differentiation, and in humans, they are divided into four clusters (HOXA, HOXB, HOXC, HOXD).
  • This study focused on the role of these genes in esophageal squamous cell carcinoma (ESCC), finding that while mutations were rare, seven specific homeobox genes were significantly different in ESCC tissues compared to non-cancerous ones.
  • The study revealed that these genes' dysregulation may affect cancer pathways and is linked to poor survival rates, suggesting their potential as prognostic biomarkers and targets for new therapies.
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!