Crystal structure of Mycobacterium tuberculosis Rv2606c: a pyridoxal biosynthesis lyase.

Biochem Biophys Res Commun

School of Life Science and Biotechnology, Kyungpook National University, Republic of Korea.

Published: May 2013

AI Article Synopsis

  • Tuberculosis is caused by the bacterium Mycobacterium tuberculosis, and researchers studied a specific protein, Rv2606c, believed to play a role in pyridoxal biosynthesis.
  • The structure of Rv2606c has a similar design to other PdxS proteins and contains a glycerol molecule at its active site, which aids in understanding how it interacts with potential substrates.
  • Additionally, Rv2606c forms a stable complex with another protein (Rv2604c), indicating a possible functional relationship between these proteins in the context of tuberculosis.

Article Abstract

Tuberculosis is a lethal infectious disease caused by Mycobacterium tuberculosis. We determined the crystal structure of Rv2606c, a potential pyridoxal biosynthesis lyase (PdxS), from M. tuberculosis H37Rv at 1.8 Å resolution. The overall structure of the protein, composed of a (β/α)8-barrel and two small 310-helices, was quite similar to those of other PdxS proteins. A glycerol molecule was observed to be bound at the active site of the Rv2606c structure through interactions with the conserved residues of Asp29 and Lys86, providing information regarding the potential active site and the substrate-binding environment of the protein. The interface for Rv2606c dodecamerization, which is primarily mediated by salt bridges and hydrophobic interactions, was quite different from those of other PdxS proteins. Furthermore, we observed that the Rv2606c and Rv2604c form a stable complex, suggesting that these proteins might function as PdxS and PdxT in M. tuberculosis.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbrc.2013.04.068DOI Listing

Publication Analysis

Top Keywords

crystal structure
8
mycobacterium tuberculosis
8
pyridoxal biosynthesis
8
biosynthesis lyase
8
pdxs proteins
8
active site
8
tuberculosis
5
rv2606c
5
structure mycobacterium
4
tuberculosis rv2606c
4

Similar Publications

Characterization and formation of the biomineral aragonite structures of the Noah's Ark shell ( L.,1758) were studied from structural, morphogenetic, and biochemical points of view. Structural and morphological features were examined using X-ray diffraction, field-emission scanning electron microscopy, and atomic force microscopy, while thermal properties were determined by thermogravimetric and differential thermal analyses.

View Article and Find Full Text PDF

Inosine 5'-monophosphate dehydrogenase (IMPDH) is a promising antibiotic target. This enzyme catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5'-monophosphate (XMP), which is the rate-limiting step in guanine nucleotide biosynthesis. Bacterial IMPDH-specific inhibitors have been developed that bind to the NAD site.

View Article and Find Full Text PDF

Phase-Engineered ZrO for Tuning Catalytic Oxidation of Dichloromethane Over W/ZrO:Zr-Doped WO Clusters and the Hydrolysis-Oxidation Mechanism.

Environ Sci Technol

January 2025

State Key Laboratory of Green Chemical Engineering and Industrial Catalysis, Research Institute of Industrial Catalysis, School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, PR China.

Catalytic elimination through an oxidative decomposition pathway is the most promising candidate for the purification of chlorinated volatile organic compound (CVOC) pollutants, but the complicated mechanisms and the formation pathways of hydrogenated byproducts still need to be clearly revealed. Herein, W/ZrO, as a structure-tunable catalyst, is used to catalytically oxidize dichloromethane (DCM) and clarify the formation pathway of monochloromethane (MCM). Crystal engineering of ZrO tailors surface WO species; practically, the predominant Zr-WO clusters and crystalline WO can be obtained on monoclinic (m-ZrO) and tetragonal (t-ZrO) phases.

View Article and Find Full Text PDF

In this work, a theoretical approach is developed to investigate the structural properties of ionic microgels induced by a circularly polarized (CP) electric field. Following a similar study on chain formation in the presence of linearly polarized fields [T. Colla , , 2018, , 4321-4337], we propose an effective potential between microgels which incorporates the field-induced interactions a static, time averaged polarizing charge at the particle surface.

View Article and Find Full Text PDF

Analytical Model for Atomic Relaxation in Twisted Moiré Materials.

Phys Rev Lett

December 2024

National University of Singapore, Department of Materials Science and Engineering, 9 Engineering Drive 1, Singapore 117575.

By virtue of being atomically thin, the electronic properties of heterostructures built from two-dimensional materials are strongly influenced by atomic relaxation. The atomic layers behave as flexible membranes rather than rigid crystals. Here we develop an analytical theory of lattice relaxation in twisted moiré materials.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!