We show that a previously annotated hypothetical protein is the transposase of a new and active IS element, ISCahy1, widespread in Caldicellulosiruptor species. Transposition generated an 11-bp direct repeat at the insertion site in Caldicellulosiruptor hydrothermalis, suggesting a cut-and-paste mechanism. The discovery of an active insertion sequence in Caldicellulosiruptor species led to a survey of potential IS elements in the genome sequences of eight Caldicellulosiruptor species that identified several new elements, including one novel to this genus.
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http://dx.doi.org/10.1007/s10295-013-1244-z | DOI Listing |
Front Microbiol
August 2023
Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States.
The order Thermoanaerobacterales currently consists of fermentative anaerobic bacteria, including the genus . are represented by thirteen species; all, but one, have closed genome sequences. Interest in these extreme thermophiles has been motivated not only by their high optimal growth temperatures (≥70°C), but also by their ability to hydrolyze polysaccharides including, for some species, both xylan and microcrystalline cellulose.
View Article and Find Full Text PDFExtremophiles
February 2023
Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, 27695-7905, USA.
Caldicellulosiruptor species are proficient at solubilizing carbohydrates in lignocellulosic biomass through surface (S)-layer bound and secretomic glycoside hydrolases. Tāpirins, surface-associated, non-catalytic binding proteins in Caldicellulosiruptor species, bind tightly to microcrystalline cellulose, and likely play a key role in natural environments for scavenging scarce carbohydrates in hot springs. However, the question arises: If tāpirin concentration on Caldicellulosiruptor cell walls increased above native levels, would this offer any benefit to lignocellulose carbohydrate hydrolysis and, hence, biomass solubilization? This question was addressed by engineering the genes for tight-binding, non-native tāpirins into C.
View Article and Find Full Text PDFBiotechnol Biofuels Bioprod
February 2023
Department of Applied Microbiology, Lund University, 124, 221 00, Lund, Sweden.
Background: Co-cultures and cell immobilization have been used for retaining biomass in a bioreactor, with the aim to improve the volumetric hydrogen productivity (Q). Caldicellulosiruptor kronotskyensis is a strong cellulolytic species that possesses tāpirin proteins for attaching on lignocellulosic materials. C.
View Article and Find Full Text PDFMicrobiol Resour Announc
March 2023
Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, USA.
The genome sequences of three extremely thermophilic, lignocellulolytic species were closed, improving previously reported multiple-contig assemblies. All 14 classified spp. now have closed genomes.
View Article and Find Full Text PDFPLoS One
January 2023
BluCon Biotech GmbH, Cologne, Germany.
Caldicellulosiruptor is a genus of thermophilic to hyper-thermophilic microorganisms that express and secrete an arsenal of enzymes degrading lignocellulosic biomasses into fermentable sugars. Because of this distinguished feature, strains of Caldicellulosiruptor have been considered as promising candidates for consolidated bioprocessing. Although a few Caldicellulosiruptor strains with industrially relevant characteristics have been isolated to date, it is apparent that further improvement of the strains is essential for industrial application.
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