Background: A rapid, non-invasive, and inexpensive point-of-care (POC) diagnostic for malaria followed by therapeutic intervention would improve the ability to control infection in endemic areas.

Methods: A semi-nested PCR amplification protocol is described for quantitative detection of Plasmodium falciparum and is compared to a traditional nested PCR. The approach uses primers that target the P. falciparum dihydrofolate reductase gene.

Results: This study demonstrates that it is possible to perform an uninterrupted, asymmetric, semi-nested PCR assay with reduced assay time to detect P. falciparum without compromising the sensitivity and specificity of the assay using saliva as a testing matrix.

Conclusions: The development of this PCR allows nucleic acid amplification without the need to transfer amplicon from the first PCR step to a second reaction tube with nested primers, thus reducing both the chance of contamination and the time for analysis to < two hours. Analysis of the PCR amplicon yield was adapted to lateral flow detection using the quantitative up-converting phosphor (UCP) reporter technology. This approach provides a basis for migration of the assay to a POC microfluidic format. In addition the assay was successfully evaluated with oral samples. Oral fluid collection provides a simple non-invasive method to collect clinical samples.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3605351PMC
http://dx.doi.org/10.1186/1475-2875-12-74DOI Listing

Publication Analysis

Top Keywords

semi-nested pcr
12
plasmodium falciparum
8
pcr
6
improved assay
4
assay detect
4
detect plasmodium
4
falciparum
4
falciparum uninterrupted
4
uninterrupted semi-nested
4
pcr quantitative
4

Similar Publications

Enhanced subtyping from stool samples using semi-nested barcode PCR: validation with an NGS-based approach.

Biotechniques

December 2024

Laboratorio de Parasitología Molecular, Vicerrectoría de Investigaciones, Universidad El Bosque, Bogotá, Colombia.

In 2006, a PCR method was introduced to subtype by Sanger sequencing of an ≈610 bp amplicon of the 18S rRNA gene. This method, known as barcoding-PCR, has become widespread, although the primer pair used can amplify non- sequences, which can result in false positives. Barcoding-PCR is most effective with DNA extracted from cultures, limiting its sensitivity when used directly with stool samples.

View Article and Find Full Text PDF

Development of a loop-mediated isothermal amplification (LAMP) assay for the rapid detection of Beiji nairovirus.

Microb Pathog

December 2024

School of Animal Science and Technology, Foshan University, Foshan, 528225, Guangdong Province, China; Department of Infectious Diseases, Center for Pathogen Biology and Infectious Diseases, Key Laboratory of Organ Regeneration and Transplantation of the Ministry of Education, The First Hospital of Jilin University, Changchun, 130122, Jilin Province, China; Institute of Zoology, Guangdong Academy of Sciences, Guangzhou, 510260, Guangdong Province, China. Electronic address:

Beiji nairovirus (BJNV) is a recently discovered tick-borne RNA virus associated with human febrile illness. This study aimed to develop a loop-mediated isothermal amplification (LAMP) assay for the precise detection of BJNV, with a specific focus on assessing its effectiveness with clinical samples. The optimal molecular target was identified as the BJNV small (S) segment gene, and the ideal reaction conditions were established at 65 °C for 50 min.

View Article and Find Full Text PDF

Detection of Babesia spp., and Theileria spp., in sheep across diverse provinces of Iran.

Vet Parasitol Reg Stud Reports

November 2024

Department of Parasite Vaccine Research and Production, Razi Vaccine and Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran. Electronic address:

Article Synopsis
  • * Out of 373 samples, 27% displayed piroplasm infections, predominantly from Theileria spp. (78 samples) and Babesia spp. (23 samples), with a molecular detection rate of 38%.
  • * The main findings indicated that Theileria ovis was prevalent, while Babesia ovis was the primary cause of Babesiosis, highlighting the importance of molecular diagnostics for accurate identification, especially in co-infection scenarios.
View Article and Find Full Text PDF

Although Amblyomma variegatum and Ehrlichia ruminantium infections have been reported in cattle from some agro-ecological zones (AEZs) of Cameroon, the transmission patterns of this bacterium seem to vary according to endemic areas and its prevalence as well as that of Heartwater remains not well understood in most sub-Saharan African countries. This study was designed to detect E. ruminantium infections in cattle of four AEZs of Cameroon and to identify areas presenting enzootic stability and those with potentially high risk for Heartwater.

View Article and Find Full Text PDF

We developed and evaluated a semi-nested PCR assay for the detection of infection in goats based on the sequence of the gene. Following in silico screening, the specificity of the primers was assessed using reference DNA samples, including , , , , , , , and . To determine the sensitivity of the method, blood infected with 2% parasitemia of was diluted to 10-fold serial dilutions.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!