We study the nonlinear dynamics of a homogeneous DNA chain which is based on site-dependent finite stacking and pairing enthalpies. We introduce an extended nonlinear Schrödinger equation describing the dynamics of modulated wave in DNA model. We obtain envelope bright solitary waves with compact support as a solution. Analytical criteria of existence of this solution are derived. The stability of bright compactons is confirmed by numerical simulations of the exact equations of the lattice. The impact of the finite stacking energy is investigated and we show that some of these compact bright solitary waves are robust, while others decompose very quickly depending on the finite stacking parameters.
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http://dx.doi.org/10.1109/EMBC.2012.6347222 | DOI Listing |
Sci Rep
January 2025
Department of Mathematics, Faculty of Science, University of Tabuk, P.O. Box 741, 71491, Tabuk, Saudi Arabia.
In this study, the -model expansion method is showed to be useful for finding solitary wave solutions to the Klein-Gordon (KG) equation. We develop a variety of solutions, including Jacobi elliptic functions, hyperbolic forms, and trigonometric forms, so greatly enhancing the range of exact solutions attainable. The 2D, 3D, and contour plots clearly show different types of solitary waves, like bright, dark, singular, and periodic solitons.
View Article and Find Full Text PDFHeliyon
November 2024
Laboratory of Research on Advanced Materials and Nonlinear Sciences, Department of Physics, Faculty of Science, University of Buea, P.O. Box 63, Buea, Cameroon.
In the present work, we focus on the longitudinal model of microtubules (MTs) proposed by Satarić et al. (1993) [12], and that considers MT cells to have ferroelectric properties (behaviors) due to dipolar oscillations of dimers within MTs, i.e.
View Article and Find Full Text PDFSci Rep
November 2024
Department of Physics, College of Khurma University College, Taif University, P.O. Box 11099, Taif, 21944, Saudi Arabia.
Sci Rep
November 2024
Departament of Mechanical Engineering, Wrocław University of Science and Technology, Wrocław, Poland.
Solitary wave solutions to the nonlinear evolution equations have recently attracted widespread interest in engineering and physical sciences. In this work, we investigate the fractional generalised nonlinear Pochhammer-Chree equation under the power-law of nonlinearity with order m. This equation is used to describe longitudinal deformation wave propagation in an elastic rod.
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November 2024
Department of Mathematics, Faculty of Science, University of Tabuk, P.O. Box 741, 71491, Tabuk, Saudi Arabia.
This work investigates the Kraenkel-Manna-Merle (KMM) system, which models the nonlinear propagation of short waves in saturated ferromagnetic materials subjected to an external magnetic field, despite the absence of electrical conductivity. The study aims to explore and derive new solitary wave solutions for this system using two distinct methodological approaches. In the first approach, the KMM system is transformed into a system of nonlinear ordinary differential equations (ODEs) via Lie group transformation.
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