mRNAStab--a web application for mRNA stability analysis.

Bioinformatics

Department of Informatics and Department of Biochemistry and Molecular Biology, Universitat de València, 46100 Burjassot, Spain.

Published: March 2013

Eukaryotic gene expression is regulated both at the transcription and the mRNA degradation levels. The implementation of functional genomics methods that allow the simultaneous measurement of transcription (TR) and degradation (DR) rates for thousands of mRNAs is a huge improvement in this field. One of the best established methods for mRNA stability determination is genomic run-on (GRO). It allows the measurement of DR, TR and mRNA levels during cell dynamic responses. Here, we offer a software package that provides improved algorithms for determination of mRNA stability during dynamic GRO experiments.

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btt040DOI Listing

Publication Analysis

Top Keywords

mrna stability
12
mrna
5
mrnastab--a web
4
web application
4
application mrna
4
stability analysis
4
analysis eukaryotic
4
eukaryotic gene
4
gene expression
4
expression regulated
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!