Next-generation sequencing technology is available to many clinical laboratories; however, it is not yet widely used in routine microbiology practice. To demonstrate the feasibility of using whole-genome sequencing in a routine clinical microbiology workflow, we sequenced the genome of every organism isolated in our laboratory for 1 day.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3666789PMC
http://dx.doi.org/10.1128/JCM.03237-12DOI Listing

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