Animal guts and plant roots have absorption roles for nutrient uptake and converge in harboring large, complex, and dynamic groups of microbes that participate in degradation or modification of nutrients and other substances. Gut and root bacteria regulate host gene expression, provide metabolic capabilities, essential nutrients, and protection against pathogens, and seem to share evolutionary trends.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3536091PMC
http://dx.doi.org/10.1128/AEM.02553-12DOI Listing

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