In this paper we study γ-structures filtered by topological genus. γ-structures are a class of RNA pseudoknot structures that plays a key role in the context of polynomial time folding of RNA pseudoknot structures. A γ-structure is composed by specific building blocks, that have topological genus less than or equal to γ, where composition means concatenation and nesting of such blocks. Our main results are the derivation of a new bivariate generating function for γ-structures via symbolic methods, the singularity analysis of the solutions and a central limit theorem for the distribution of topological genus in γ-structures of given length. In our derivation specific bivariate polynomials play a central role. Their coefficients count particular motifs of fixed topological genus and they are of relevance in the context of genus recursion and novel folding algorithms.
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http://dx.doi.org/10.1016/j.mbs.2012.09.006 | DOI Listing |
Ann Bot
December 2024
Hunan Provincial key Laboratory of Ecological Conservation and Sustainable Utilization of Wulingshan Resources, College of Biology and Environmental Sciences, Jishou University, Jishou, Hunan, 416000, China.
Background And Aims: Nekemias is a small genus of the grape family, with nine species discontinuously distributed in temperate to subtropical zones of the Northern Hemisphere but mostly in East Asia. Previous phylogenetic studies on Nekemias have mainly based on a few chloroplast markers, and the phylogenetic framework and systematic relationships are still highly contested.
Methods: We carried out a systematic framework reconstruction of Nekemias and intra-generic reticulate evolutionary analyses based on extensive single-copy nuclear and chloroplast genomic data obtained by the Hyb-Seq approach, combining genome skimming and target enrichment.
Adv Mater
December 2024
State Key Laboratory of Bioelectronics, Jiangsu Key Laboratory of Biomaterials and Devices, School of Biological Science and Medical Engineering, Southeast University, Nanjing, 210009, China.
Proc Natl Acad Sci U S A
November 2024
Department of Civil and Environmental Engineering, Princeton University, Princeton, NJ 08544.
The concepts of origami and kirigami have often been presented separately. Here, we put forth a synergistic approach-the folded kirigami-in which kirigami assemblies are complemented by means of folding, typical of origami patterns. Besides the emerging patterns themselves, the synergistic approach also leads to topological mechanical metamaterials.
View Article and Find Full Text PDFInsects
October 2024
Wildlife and Ecology, School of Food Technology and Natural Sciences, Massey University, Private Bag 11-222, Palmerston North 4442, New Zealand.
The Anostostomatidae of Aotearoa New Zealand are well-characterized at the genus and species level, but the higher-level systematics of the family as a whole remain poorly resolved. We tested the hypothesis that the New Zealand anaostostomatid fauna consists of a single monophyletic group consistent with a single common ancestor. For phylogenetic analysis, we sampled the genera in Aotearoa New Zealand as well as representatives of the family from Australia and New Caledonia.
View Article and Find Full Text PDFPhys Rev Lett
October 2024
Department of Physics, University of Alberta, Edmonton, Alberta T6G 2E1, Canada.
Hyperbolic lattices are a new type of synthetic quantum matter emulated in circuit quantum electrodynamics and electric-circuit networks, where particles coherently hop on a discrete tessellation of two-dimensional negatively curved space. While real-space methods and a reciprocal-space hyperbolic band theory have been recently proposed to analyze the energy spectra of those systems, discrepancies between the two sets of approaches remain. In this work, we reconcile those approaches by first establishing an equivalence between hyperbolic band theory and U(N) topological Yang-Mills theory on higher-genus Riemann surfaces.
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