Single temperature for Monte Carlo optimization on complex landscapes.

Phys Rev Lett

Department of Physics and Astronomy, Rutgers University, Piscataway, New Jersey 08854, USA.

Published: June 2012

We propose a new strategy for Monte Carlo (MC) optimization on rugged multidimensional landscapes. The strategy is based on querying the statistical properties of the landscape in order to find the temperature at which the mean first passage time across the current region of the landscape is minimized. Thus, in contrast to other algorithms such as simulated annealing, we explicitly match the temperature schedule to the statistics of landscape irregularities. In cases where these statistics are approximately the same over the entire landscape or where nonlocal moves couple distant parts of the landscape, a single-temperature MC scheme outperforms any other MC algorithm with the same move set. We also find that in strongly anisotropic Coulomb spin glass and traveling salesman problems, the only relevant statistics (which we use to assign a single MC temperature) are those of irregularities in low-energy funnels. Our results may explain why protein folding is efficient at constant temperature.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3459327PMC
http://dx.doi.org/10.1103/PhysRevLett.108.250602DOI Listing

Publication Analysis

Top Keywords

single temperature
8
monte carlo
8
carlo optimization
8
landscape
5
temperature monte
4
optimization complex
4
complex landscapes
4
landscapes propose
4
propose strategy
4
strategy monte
4

Similar Publications

A simple model of the rheological curve of HPAM solutions at different temperatures.

Sci Rep

December 2024

Laboratorio de Fluidodinámica, Facultad de Ingeniería, Universidad de Buenos Aires/CONICET, Paseo Colón 850 CABA, Buenos Aires, Argentina.

The oil and gas industry faces two significant challenges, including rising global temperatures and depletion of reserves. Enhanced recovery techniques such as polymer flooding have positioned themselves as an alternative that attracts international attention thanks to increased recovery factors with low emissions. However, existing physical models need further refinement to improve predictive accuracy and prevent design failures in polymer flooding projects.

View Article and Find Full Text PDF

This paper presents progress made toward the overarching goal to adapt single-photon-counting microcalorimeters to magnetic fusion energy research and demonstrate the value of such measurements for fusion. Microcalorimeter spectrometers combine the best characteristics of x-ray instrumentation currently available on fusion devices: high spectral resolution similar to an x-ray crystal spectrometer and broad spectral coverage sufficient to measure impurity species from Be to W. As a proof-of-principle experiment, a NASA-built x-ray microcalorimeter spectrometer has been installed on the Madison Symmetric Torus (MST) at the Wisconsin Plasma Physics Laboratory.

View Article and Find Full Text PDF

Convergent evolution of type I antifreeze proteins from four different progenitors in response to global cooling.

BMC Mol Cell Biol

December 2024

Department of Biomedical and Molecular Sciences, Queen's University, Botterell Hall, 18 Stuart Street, Kingston, K7L 3N6, Canada.

Alanine-rich, alpha-helical type I antifreeze proteins (AFPs) in fishes are thought to have arisen independently in the last 30 Ma on at least four occasions. This hypothesis has recently been proven for flounder and sculpin AFPs, which both originated by gene duplication and divergence followed by substantial gene copy number expansion. Here, we examined the origins of the cunner (wrasse) and snailfish (liparid) AFPs.

View Article and Find Full Text PDF

Structural Repair of Reduced Graphene Oxide Promoted by Single-Layer Graphene.

Adv Sci (Weinh)

December 2024

Hefei National Research Center for Physical Sciences at the Microscale, Department of Materials Science and Engineering, School of Chemistry and Materials Science, Key Laboratory of Precision and Intelligent Chemistry, University of Science and Technology of China, Hefei, Anhui, 230026, China.

High-temperature graphitization of graphene oxide (GO) is a crucial step for enhancing interlayer stacking and repairing the in-plane defects of reduced graphene oxide (rGO) films. However, the fine control of the structural repair and reducing the energy consumption in thermal treatment remain challenges. In this study, ab-initio molecular dynamics simulations combined with experiments are used to investigate the structural evolution of rGO upon thermal annealing, with or without the presence of single-layer graphene (SLG).

View Article and Find Full Text PDF

Understanding climate science is essential for effective policy development, adaptation, mitigation, and risk management. Given the inherent limitations in climate models, this study evaluates the performance of CORDEX Africa regional climate models to simulate precipitation and temperatures over the Melka-Wakena catchment. To accomplish this, the performance evaluation utilizes techniques such as multi-metric weighted ranking to select top-1 (best individual model), specific multi-model ensembles (top-N ensemble), multi-model ensemble, and average hybrid (top-N ensemble with MME) approaches at various temporal scales.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!