Parent-of-origin effects arise when an individual's genes are modified during gametogenesis. Commonly known as imprinting, affected genes may be completely, or partially, suppressed. Individual loci in mice, human and sheep are known to be imprinted, and the quantitative effects of imprinted loci have been found for many carcass traits in cattle and pigs. Differentiating between five types of loci - direct additive loci and partially and completely imprinted loci by sires and dams - is not possible as their effects are confounded such that only three of seven parameters can be estimated. An analysis of Australian Hereford and Angus heifers and bulls for four ultrasonic measures of body composition - eye muscle area, rib fat, rump fat and intramuscular fat per cent - found parent-of-origin effects for both parents in most trait-gender data sets and that they were an average of 28% of the total genetic variance. No parent-of-origin effects were found for Hereford bull intramuscular fat per cent and the maternal parent-of-origin effects were not significant for Angus Heifer eye muscle area.
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http://dx.doi.org/10.1111/j.1439-0388.2012.00996.x | DOI Listing |
Biochem Soc Trans
January 2025
Centre for Plant Molecular Biology, University of Tübingen, Tübingen 72076, Germany.
Primary axis formation is the first step of embryonic patterning in flowering plants and recent findings highlight the importance of parent-of-origin effects in this process. Apical-basal patterning has a strong influence on suspensor development, an extra-embryonic organ involved in nutrient transport to the embryo at an early stage of seed development. The endosperm, a second fertilization product, nourishes the embryo at later stages of seed development.
View Article and Find Full Text PDFPLoS Genet
January 2025
Department of Animal Sciences, The Ohio State University, Columbus, Ohio, United States of America.
Genomic imprinting is an epigenetic process that results in parent-of-origin effects on mammalian development and growth. Research on genomic imprinting in domesticated animals has lagged due to a primary focus on orthologs of mouse and human imprinted genes. This emphasis has limited the discovery of imprinted genes specific to livestock.
View Article and Find Full Text PDFJCI Insight
December 2024
Department of Ophthalmology and Roger and Karalis Johnson Retina Center, University of Washington, Seattle, United States of America.
Background: Current clinical sequencing methods cannot effectively detect DNA methylation and allele-specific variation to provide parent-of-origin information from the proband alone. Parent-of-origin effects can lead to differential disease and the inability to assign this in de novo cases limits prognostication in the majority of affected individuals with retinoblastoma, a hereditary cancer with suspected parent-of-origin effects.
Methods: To directly assign parent-of-origin in retinoblastoma patients, genomic DNA was extracted from blood samples for sequencing using a programmable, targeted single-molecule long-read DNA genomic and epigenomic approach.
BMC Genomics
December 2024
Agricultural Research and Development Program, Central State University, Wilberforce, USA.
BMC Med
December 2024
School of Biomedical Sciences, Biomedical Sciences Research Institute, Ulster University, Coleraine, Northern Ireland, BT52 1SA, UK.
Background: The human ZFP57 gene is a major regulator of imprinted genes, maintaining DNA methylation marks that distinguish parent-of-origin-specific alleles. DNA methylation of the gene itself has shown sensitivity to environmental stimuli, particularly folate status. However, the role of DNA methylation in ZFP57's own regulation has not been fully investigated.
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