Evaporation of water on a planar AgX surface leads to a strongly bound monolayer for which IR spectra display the marker peaks for modest numbers of oligomers. From 700-1800 spectra for each isotopomer, H(2)O(16) and H(2)O(18), a pair was selected with moderate intensity at 1616 cm(-1) (a peak reported for the cyclic trimer of water) from the monolayer portion of the experiment. Every selected spectrum had lesser peaks for other oligomers. The sum of a spectroscopic pair reveals the vibrational spectra of the cyclic trimers of H(2)O(16) and H(2)O(18). All fundamentals in the mid-IR are seen including the bending, OH stretching, and intramolecular H-bonding regions, the last never previously recognized. The relative prevalence of cyclic trimer can be attributed to the "low" water concentration on the surface. In addition, a ponderal effect leads to higher concentrations of cyclic trimer in the H(2)O(18) spectra than in the H(2)O(16) spectra and allows observation of combination bands in the H(2)O(18) spectra, representing a new type of isotope effect. The spectroscopic results for the two water isotopomers are much more extensive than those obtained through matrix isolation. Remarkably complete spectra of the cyclic trimer are obtained for the first time, especially for H(2)O(18). DFT calculations with the cyclic trimer on a simplified model for the AgCl surface yield spectra consistent with the experimental spectrum. The technique can be extended to other oligomers of water and many other OH compounds.
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http://dx.doi.org/10.1021/la301613k | DOI Listing |
Phys Chem Chem Phys
November 2024
Department of Chemistry, University of California, Irvine, CA, 92697-2025, USA.
Ionization desorption of charged analytes from the surface of solid amorphous glutaric acid particles, without the assistance of an external energy source, has been shown to be a promising method that can be coupled to mass spectrometry. We conduct mechanistic studies of the later stages of this ionization process using atomistic molecular dynamics. Our analysis focuses on the hydrogen bonding, diffusion, and ion desorption from nano-aggregates of glutaric acid.
View Article and Find Full Text PDFPharm Res
November 2024
Laboratory of Molecular Architecture, Media Lab, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA.
Objective: Glutamate transporters play a key role in central nervous system physiology by maintaining excitatory neurotransmitter homeostasis. Biological assemblies of the transporters, consisting of cyclic homotrimers, emerge as a crucial aspect of glutamate transporter modulation. Hence targeting heteromerization promises an effective approach for modulator design.
View Article and Find Full Text PDFJ Phys Chem A
November 2024
Department of Chemistry, New York University, New York, New York 10003, United States.
HF trimer, as the smallest and the lightest cyclic hydrogen-bonded (HB) cluster, has long been a favorite prototype system for spectroscopic and theoretical investigations of the structure, energetics, spectroscopy, and dynamics of hydrogen-bond networks. Recently, rigorous quantum 12D calculations of the coupled intra- and intermolecular vibrations of this fundamental HB trimer ( , , 234109) were performed, employing an older ab initio-based many-body potential energy surface (PES). While the theoretical results were found to be in reasonably good agreement with the available spectroscopic data, it was also evident that it is highly desirable to develop a more accurate 12D PES of HF trimer.
View Article and Find Full Text PDFCell
December 2024
Laboratory of Bacteriology, The Rockefeller University, New York, NY 10065, USA; Howard Hughes Medical Institute, The Rockefeller University, New York, NY 10065, USA. Electronic address:
The Herrmann-Beller catalyst, Pd[(C^P)(μ-OAc)], is readily formed by reaction of the cyclic trimer of 'Pd(OAc)' with P(-tol). In the presence of hydroxide, Pd(C^P)(μ-OAc)] converts to [Pd(C^P)(μ -OH)]. Here, we report how this activated Pd precatalyst species, and related species, serve as a conduit for formation of higher order Pd clusters containing multiple cyclopalladated P(-tol) ligands.
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