Recently, the in vivo imaging of pulmonary alveoli was made possible thanks to confocal microscopy. For these images, we wish to aid the clinician by developing a computer-aided diagnosis system, able to discriminate between healthy and pathological subjects. The lack of expertise currently available on these images has first led us to choose a generic approach, based on pixel-value description of randomly extracted subwindows and decision tree ensemble for classification (extra-trees). In order to deal with the great complexity of our images, we adapt this method by introducing a texture-based description of the subwindows, based on local binary patterns. We show through our experimental protocol that this adaptation is a promising way to classify fibered confocal fluorescence microscopy images. In addition, we introduce a rejection mechanism on the classifier output to prevent nondetection errors.
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http://dx.doi.org/10.1109/TBME.2012.2204747 | DOI Listing |
Biotechnol Biofuels Bioprod
January 2025
Institute for Pulsed Power and Microwave Technology (IHM), Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany.
Background: The gradual extrusion of water-soluble intracellular components (such as proteins) from microalgae after pulsed electric field (PEF) treatment is a well-documented phenomenon. This could be utilized in biorefinery applications with lipid extraction taking place after such an 'incubation' period, i.e.
View Article and Find Full Text PDFCommun Biol
January 2025
Life Sciences Institute, University of Michigan, Ann Arbor, MI, USA.
Rapid structural analysis of purified proteins and their complexes has become increasingly common thanks to key methodological advances in cryo-electron microscopy (cryo-EM) and associated data processing software packages. In contrast, analogous structural analysis in cells via cryo-electron tomography (cryo-ET) remains challenging due to critical technical bottlenecks, including low-throughput sample preparation and imaging, and laborious data processing methods. Here, we describe a rapid in situ cryo-ET sample preparation and data analysis workflow that results in the routine determination of sub-nm resolution ribosomal structures.
View Article and Find Full Text PDFNat Commun
January 2025
Université Paris-Saclay, CNRS, Institut des neurosciences Paris-Saclay, 91400, Saclay, France.
To ensure their survival, animals must be able to respond adaptively to threats within their environment. However, the precise neural circuit mechanisms that underlie flexible defensive behaviors remain poorly understood. Using neuronal manipulations, machine learning-based behavioral detection, electron microscopy (EM) connectomics and calcium imaging in Drosophila larvae, we map second-order interneurons that are differentially involved in the competition between defensive actions in response to competing aversive cues.
View Article and Find Full Text PDFACS Chem Neurosci
January 2025
School of Health & Life Sciences, Teesside University, Middlesbrough TS1 3BX, United Kingdom.
The aggregation of α-synuclein is crucial to the development of Lewy body diseases, including Parkinson's disease and dementia with Lewy bodies. The aggregation pathway of α-synuclein typically involves a defined sequence of nucleation, elongation, and secondary nucleation, exhibiting prion-like spreading. This study employed Raman spectroscopy and machine learning analysis, alongside complementary techniques, to characterize the biomolecular changes during the fibrillation of purified recombinant wild-type α-synuclein protein.
View Article and Find Full Text PDFCell Rep Methods
January 2025
Department of Nutrition, University of California, Davis, Davis, CA 95616, USA. Electronic address:
High-density lipoprotein (HDL) particle diameter distribution is informative in the diagnosis of many conditions, including Alzheimer's disease (AD). However, obtaining an accurate HDL size measurement is challenging. We demonstrated the utility of measuring the diameter of more than 1,800,000 HDL particles with the deep learning model YOLOv7 (you only look once) from micrographs of 183 HDL samples, including patients with dementia or normal cognition (controls).
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