Short tandem repeat (STR) loci in human genome are widely used in human identity testing and forensic casework, and most commercial kits available are based on multiplex amplification of common 10-16 STR loci with each analysis range specifically established in some populations. Therefore, this system may miss unusually small or large repeats beyond predefined analysis range. Here, we report unusually large repeats of 25-, 26- and novel 30-repeat in PentaE locus, suggesting that it may not be so rare in a certain population and necessitating extensive validation process of multiplex system prior to introduction into the population concerned.
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http://dx.doi.org/10.1016/j.fsigen.2012.06.004 | DOI Listing |
J Investig Med High Impact Case Rep
December 2024
Osaka University, Japan.
Data Brief
August 2024
Tropical Ecology and Evolution (TrEE) Lab, Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal (IISER Bhopal), Madhya Pradesh 462066, India.
The plant family Zingiberaceae consists of many medicinally important tropical herbs. Here, we provide a contig level genome assembly for , one of the medicinally utilized species in this family We used genome assembly to identify candidate Simple Sequence Repeat (SSR) markers in the nuclear, chloroplast and mitochondrial compartments. We identified a total of 60,695 SSRs, which consisted of di-, tri-, tetra-, penta- and complex repeat types, and primers were designed for 14,851 SSR loci from both coding and non-coding parts of the genome.
View Article and Find Full Text PDFForensic Sci Int Genet
November 2024
Forensic Biology Laboratory, PathWest Laboratory Medicine WA, Locked Bag 2009, Nedlands, Western Australia 6009, Australia.
Forensic Biology is contingent upon matching DNA profiles between a crime sample and a reference sample. There are several capillary electrophoresis kits available to generate a short tandem repeat (STR) profile from DNA samples, while newer methods using massively parallel sequencing are slowly being implemented in forensic laboratories worldwide. During evaluation of a newer capillary electrophoresis kit, Applied Biosystems™ VeriFiler™ Plus, a discordance was observed in the Penta D locus.
View Article and Find Full Text PDFLeg Med (Tokyo)
July 2024
Forensic DNA Section, National Forensic Service Jeju Branch, 221, Cheomdan-ro, Jeju-si, Jeju-do 63309, Republic of Korea; Department of Forensic Medicine, Seoul National University College of Medicine, 103, Daehak-ro, Jongno-gu, Seoul 03080, Republic of Korea. Electronic address:
This study aimed to estimate A-STR mutation rates in 2,317 Korean parent-child trios by examining 20 Combined DNA Index System (CODIS) core loci (D3S1358, D5S818, D7S820, D8S1179, D13S317, D16S539, D18S51, D21S11, CSF1PO, FGA, TH01, TPOX, vWA, D1S1656, D2S441, D2S1338, D10S1248, D12S391, D19S433, and D22S1045) and three non-CODIS loci (Penta E, Penta D, and SE33). Locus-specific mutation rate estimates varied from 0.00 to 8.
View Article and Find Full Text PDFGenome skimming (shallow whole-genome sequencing) offers time- and cost-efficient production of large amounts of DNA data that can be used to address unsolved evolutionary questions. Here we address phylogenetic relationships and topological incongruence in the tribe Anthospermeae (Rubiaceae), using phylogenomic data from the mitochondrion, the nuclear ribosomal cistron, and the plastome. All three genomic compartments resolve relationships in the Anthospermeae; the tribe is monophyletic and consists of three major subclades.
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