Bioelectrochemical systems (BES) are increasingly being considered for bioremediation applications, such as the reductive transformation of chlorinated hydrocarbons in subsurface environments. These systems typically rely on a polarized solid-state electrode (i.e. a cathode) serving as electron donor for the microbially catalyzed reductive dechlorination of chlorinated contaminants. The microorganisms involved in dechlorinating biocathodes are not still identified. Particularly, it is not clear whether the same microorganisms responsible for the reductive dechlorination in 'conventional' bioremediation systems (i.e. those based on the supply of soluble substrates as electron donors) also play a role in BES. Here, we analyzed by CARD-FISH, the microbial composition of a dechlorinating biocathode operated at different set potential, in the range from -250 mV to -750 mV (vs. the standard hydrogen electrode, SHE). The rate and extent of TCE dechlorination, as well as of competing metabolisms (i.e. methanogenesis), were found to increase as the cathode potential decreased. The higher metabolic activities observed at the more reducing cathode potentials were mirrored by a higher total biomass concentration (as DAPI-stained cells) in the cathode effluent. CARD-FISH analysis revealed that Dehalococcoides was the dominant dechlorinating bacterial genus (from 65% to 100% of Bacteria) in the range from -550 mV to -750 mV, whereas it was abruptly outcompeted by other (yet unidentified) members of the Chloroflexi phylum, when the cathode was controlled in the range from -250 mV to -450 mV. Most probably, the observed changes in the microbial composition of the biocathode were driven by changes in the dominant mechanisms of electron transfer to TCE: mediated by the electrolytic production of H(2) gas (in the range from -550 mV to -750 mV), or direct (in the range of cathode potentials from -250 mV to -450 mV).
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http://dx.doi.org/10.1016/j.nbt.2012.06.002 | DOI Listing |
ISME Commun
January 2024
Department of Aquatic Microbial Ecology, Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, Na Sadkach 7, 37005 České Budějovice, Czech Republic.
are abundant in soil, peatlands, and sediments, but their ecology in freshwater environments remains understudied. UBA12189, an genus, is an uncultivated, genome-streamlined lineage with a small genome size found in aquatic environments where detailed genomic analyses are lacking. Here, we analyzed 66 MAGs of UBA12189 (including one complete genome) from freshwater lakes and rivers in Europe, North America, and Asia.
View Article and Find Full Text PDFSyst Appl Microbiol
November 2024
Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Celsius Str 1, 28359 Bremen, Germany. Electronic address:
Microbial communities in marine sediments represent some of the densest and most diverse biological communities known, with up to a billion cells and thousands of species per milliliter. Among this taxonomic diversity, the class Acidimicrobiia, within the phylum Actinomycetota, stands out for its consistent presence, yet its limited taxonomic understanding obscures its ecological role. We used metagenome-assembled genomes from a 5-year Arctic fjord sampling campaign and compared them to publicly available Acidimicrobiia genomes using 16S rRNA gene and whole-genome phylogenies, alongside gene prediction and annotation to study their taxonomy and genomic potential.
View Article and Find Full Text PDFISME J
January 2024
Department of Aquatic Microbial Ecology, Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, 37005, České Budějovice, Czech Republic.
ISME J
January 2024
Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany.
Heterotrophic microbes are central to organic matter degradation and transformation in marine sediments. Currently, most investigations of benthic microbiomes do not differentiate between processes in the porewater and on the grains and, hence, only show a generalized picture of the community. This limits our understanding of the structure and functions of sediment microbiomes.
View Article and Find Full Text PDFFront Microbiol
July 2024
Department of Geosciences, National Taiwan University, Taipei, Taiwan.
Methane-oxidizing bacteria (MOB) is a group of planktonic microorganisms that use methane as their primary source of cellular energy. For tropical lakes in monsoon Asia, there is currently a knowledge gap on MOB community diversity and the factors influencing their abundance. Herewith, we present a preliminary assessment of the MOB communities in three maar lakes in tropical monsoon Asia using Catalyzed Reporter Deposition, Fluorescence In-Situ Hybridization (CARD-FISH), 16S rRNA amplicon sequencing, and pmoA gene sequencing.
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