Inference system using softcomputing and mixed data applied in metabolic pathway datamining.

Int J Data Min Bioinform

Departamento de Electrónica, Universidad Técnica Federico Santa María, Avda España 1680, Valparaiso, 2340000, Chile.

Published: September 2012

This paper describes the development of an inference system used for the identification of genes that encode enzymes of metabolic pathways. Input sequence alignment values are used to classify the best candidate genes for inclusion in a metabolic pathway map. The system workflow allows the user to provide feedback, which is stored in conjunction with analysed sequences for periodic retraining. The construction of the system involved the study of several different classifiers with various topologies, data sets and parameter normalisation data models. Experimental results show an excellent prediction capability with the classifiers trained with mixed data providing the best results.

Download full-text PDF

Source
http://dx.doi.org/10.1504/ijdmb.2012.045539DOI Listing

Publication Analysis

Top Keywords

inference system
8
mixed data
8
metabolic pathway
8
system softcomputing
4
softcomputing mixed
4
data
4
data applied
4
applied metabolic
4
pathway datamining
4
datamining paper
4

Similar Publications

Uncertainty-Aware Multimodal Trajectory Prediction via a Single Inference from a Single Model.

Sensors (Basel)

January 2025

Seamless Trans-X Lab (STL), School of Integrated Technology, Yonsei University, Incheon 21983, Republic of Korea.

In the domain of autonomous driving, trajectory prediction plays a pivotal role in ensuring the safety and reliability of autonomous systems, especially when navigating complex environments. Unfortunately, trajectory prediction suffers from uncertainty problems due to the randomness inherent in the driving environment, but uncertainty quantification in trajectory prediction is not widely addressed, and most studies rely on deep ensembles methods. This study presents a novel uncertainty-aware multimodal trajectory prediction (UAMTP) model that quantifies aleatoric and epistemic uncertainties through a single forward inference.

View Article and Find Full Text PDF

This study presents a comprehensive workflow for developing and deploying Multi-Layer Perceptron (MLP)-based soft sensors on embedded FPGAs, addressing diverse deployment objectives. The proposed workflow extends our prior research by introducing greater model adaptability. It supports various configurations-spanning layer counts, neuron counts, and quantization bitwidths-to accommodate the constraints and capabilities of different FPGA platforms.

View Article and Find Full Text PDF

EM-AUC: A Novel Algorithm for Evaluating Anomaly Based Network Intrusion Detection Systems.

Sensors (Basel)

December 2024

Department of Engineering Management and Systems Engineering, George Washington University, Washington, DC 20052, USA.

Effective network intrusion detection using anomaly scores from unsupervised machine learning models depends on the performance of the models. Although unsupervised models do not require labels during the training and testing phases, the assessment of their performance metrics during the evaluation phase still requires comparing anomaly scores against labels. In real-world scenarios, the absence of labels in massive network datasets makes it infeasible to calculate performance metrics.

View Article and Find Full Text PDF
Article Synopsis
  • The rise of Industry 4.0 has increased the need for effective fault diagnosis in servo motors, highlighting the limitations of traditional methods that rely on expert knowledge and handcrafted features.
  • A new approach combines multi-scale convolutional neural networks (MSCNNs), long short-term memory networks (LSTM), and attention mechanisms, making it more efficient for complex industrial settings.
  • This method is optimized for deployment on edge devices through techniques like knowledge distillation and model quantization, resulting in lower computational demands while maintaining high accuracy in diagnosing faults in servo motors.
View Article and Find Full Text PDF

Gene expression quantitative trait loci are widely used to infer relationships between genes and central nervous system (CNS) phenotypes; however, the effect of brain disease on these inferences is unclear. Using 2,348,438 single-nuclei profiles from 391 disease-case and control brains, we report 13,939 genes whose expression correlated with genetic variation, of which 16.7-40.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!