Objectives: To compare chi-squared automatic interaction detection (CHAID) classification trees vs the seventh edition of the TNM classification for patients with head and neck squamous cell carcinoma and to assess whether CHAID classification trees might improve results obtained with the TNM classification.
Design: Patient disease was classified according to CHAID classification trees and the TNM classification, and the results were compared.
Setting: Academic research.
Patients: A total of 3373 patients with carcinoma of the oral cavity, oropharynx, hypopharynx, or larynx.
Main Outcome Measures: The 2 classification methods were evaluated objectively, measuring intrastage homogeneity (hazard consistency), interstage heterogeneity (hazard discrimination), and disease stage distribution among patients (balance). In addition, to assess agreement between CHAID classification trees and the TNM classification, we calculated the κ statistic, weighted linearly and quadratically.
Results: Objective evaluation of the quality of the classification methods indicated that CHAID classification trees performed better than the TNM classification in terms of hazard consistency (2.51 for CHAID and 3.01 for TNM) and hazard discrimination (70.9% for CHAID and 52.7% for TNM) but not balance (-31.7% for CHAID and -15.5% for TNM). Analysis of concordance between the classification methods showed that the quadratic κ statistic was 0.77 (95% CI, 0.76-0.78) and the linear κ statistic was 0.59 (95% CI, 0.57-0.60) (P < .001 for both).
Conclusion: CHAID classification trees performed better than the TNM classification and offer potential inclusion of new prognostic factors.
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http://dx.doi.org/10.1001/archoto.2011.1448 | DOI Listing |
Nature
January 2025
Machine Learning Lab, University of Freiburg, Freiburg, Germany.
Tabular data, spreadsheets organized in rows and columns, are ubiquitous across scientific fields, from biomedicine to particle physics to economics and climate science. The fundamental prediction task of filling in missing values of a label column based on the rest of the columns is essential for various applications as diverse as biomedical risk models, drug discovery and materials science. Although deep learning has revolutionized learning from raw data and led to numerous high-profile success stories, gradient-boosted decision trees have dominated tabular data for the past 20 years.
View Article and Find Full Text PDFActa Parasitol
January 2025
Academy of Animal Sciences and Veterinary Medicine, Qinghai University, Xining, People's Republic of China.
Purpose: Hypoderma pantholopsum is a parasite that parasitizes Tibetan antelopes (Pantholops hodgsonii). This study aims was to reveal the genetic diversity within H. pantholopsum and contribute to the protection of Tibetan antelope.
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December 2024
Shaanxi Key Laboratory of Qinling Ecological Security, Shaanxi Institute of Zoology, Xi'an 710032, China.
Background: Plovers (Charadriidae), within the order of Charadriiformes, a group of modern birds distributed worldwide, are a frequent subject of molecular phylogenetic studies. While research on mitochondrial genome (mitogenome) variation within the family Charadriidae, especially intraspecific variation, is limited. Additionally, the monophyly of and the phylogenetic placement of remain contentious.
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December 2024
Key Laboratory of East China Sea Fishery Resources Exploitation, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 300 Jungong Road, Shanghai 200090, China.
Background: 20-Hydroxyecdysone (20E) is the most ubiquitous ecdysteroid (Ecd) and plays critical roles during the life cycle of arthropods. To elucidate the metabolism pathway of 20E in the economically important species, , we conducted a comprehensive exploration of the genes involved in the 20E metabolism pathway.
Methods: A comprehensive exploration of genes involved in the 20E metabolism pathway was conducted, including gene annotation, local blast using the ortholog as query, and TreeFam ortholog genes identification.
Genes (Basel)
November 2024
Shandong Provincial Center of Forest and Grass Germplasm Resources, Jinan 250102, China.
: Lindl. & Paxton is an ornamental tree species native to North China. Research on the mitochondrial genome can elucidate the evolution and biological characteristics of and better protect this important species.
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