The temperature-dependent dynamic properties of [Cu(II)(2)(ADCOO)(4)(DMF)(2)]⋅(DMF)(2) (1) and [Cu(II)(2)(ADCOO)(4)(AcOEt)(2)] (2) crystals were examined by X-ray crystallography, (1)H NMR spectroscopy, and measurements of the dielectric constants and magnetic susceptibilities (ADCOO = adamantane carboxylate, DMF = N,N-dimethylformamide, and AcOEt = ethyl acetate). In both crystals, four ADCOO groups bridged a binuclear Cu(II)-Cu(II) bond, forming a paddle-wheel [Cu(II)(2)(ADCOO)(4)] structure. The oxygen atoms of two DMF molecules in crystal 1 and two AcOEt molecules in crystal 2 were coordinated at axial positions of the [Cu(II)(2)(ADCOO)(4)] moiety, forming [Cu(II)(2)(ADCOO)(4)(DMF)(2)] and [Cu(II)(2)(ADCOO)(4)(AcOEt)(2)], respectively. Two additional DMF molecules were included in the unit cell of crystal 1, whereas AcOEt was not included in the unit cell of crystal 2. The structural analyses of crystal 1 at 300 K showed three-fold rotation of the adamantyl groups, whereas rotation of the adamantyl groups of crystal 2 at 300 K was not observed. Thermogravimetric measurements of crystal 1 indicated a gradual elimination of DMF upon increasing the temperature above 300 K. The dynamic behavior of the crystallized DMF yielded significant temperature-dependent dielectric responses in crystal 1, which showed a huge dielectric peak at 358 K in the heating process. In contrast, only small frequency-dependent dielectric responses were observed in crystal 2 because of the freezing of the molecular rotation of the adamantyl groups. The magnetic behavior was dominated by the strong antiferromagnetic coupling between the two S = 1/2 spins of the Cu(II)-Cu(II) site, with magnetic exchange energies (J) of -265 K (crystal 1) and -277 K (crystal 2).
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J Mol Model
January 2024
Department of Thoracic Oncology, Affiliated Cancer Hospital, Guizhou Medical University, Guiyang, China.
Context: Mycobacterial membrane proteins Large 3 (MmpL3) is responsible for the transport of mycobacterial acids out of cell membrane to form cell wall, which is essential for the survival of Mycobacterium tuberculosis (Mtb) and has become a potent anti-tuberculosis target. SQ109 is an ethambutol (EMB) analogue, as a novel anti-tuberculosis drug, can effectively inhibit MmpL3, and has completed phase 2b-3 clinical trials. Drug resistance has always been the bottleneck problem in clinical treatment of tuberculosis.
View Article and Find Full Text PDFChemphyschem
December 2023
Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany.
We report on the synthesis and characterization using high-resolution rotational spectroscopy of three bulky thioethers that feature an adamantyl group connected to a sulfur atom. Detailed experimental and theoretical structures are provided and compared with the 1,1'-diadamantyl ether. In addition, we expand on previous findings concerning microsolvation of adamantyl derivatives by investigating the cluster formation between these thioethers and a water molecule.
View Article and Find Full Text PDFJ Comput Aided Mol Des
June 2023
Laboratory of Medicinal Chemistry, Section of Pharmaceutical Chemistry, Department of Pharmacy, National and Kapodistrian University of Athens, Panepistimiopolis-Zografou, 15771, Athens, Greece.
N-geranyl-N΄-(2-adamantyl)ethane-1,2-diamine (SQ109) is a tuberculosis drug that has high potency against Mycobacterium tuberculosis (Mtb) and may function by blocking cell wall biosynthesis. After the crystal structure of MmpL3 from Mycobacterium smegmatis in complex with SQ109 became available, it was suggested that SQ109 inhibits Mmpl3 mycolic acid transporter. Here, we showed using molecular dynamics (MD) simulations that the binding profile of nine SQ109 analogs with inhibitory potency against Mtb and alkyl or aryl adducts at C-2 or C-1 adamantyl carbon to MmpL3 was consistent with the X-ray structure of MmpL3 - SQ109 complex.
View Article and Find Full Text PDFJ Org Chem
January 2023
Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany.
We report the synthesis of 14 2,2'-disubstituted 9,9'-bifluorenylidenes as molecular balances for the quantification of London dispersion interactions between various dispersion energy donors. For all balances, we measured Δ at 333 K using H NMR in seven organic solvents. For various alkyl and aryl substituents, we generally observe a preference for the "folded" -isomer due to attractive London dispersion interactions.
View Article and Find Full Text PDFChem Mater
May 2021
Chemistry Department, Durham University, South Road, Durham DH1 3LE, U.K.
We investigate a series of D-A molecules consisting of spiro[acridan-9,9'-fluorene] as the donor and 2-phenylenepyrimidine as the acceptor. In two of the materials, a spiro center effectively electronically isolates the D unit from (consequently) optically innocent yet structurally influential adamantyl side groups. In a third material, adamantyl groups attached directly to the acceptor strongly influence the electronic properties.
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