Computationally efficient measure of topological redundancy of biological and social networks.

Phys Rev E Stat Nonlin Soft Matter Phys

Department of Physics, Pennsylvania State University, University Park, Pennsylvania 16802, USA.

Published: September 2011

It is well known that biological and social interaction networks have a varying degree of redundancy, though a consensus of the precise cause of this is so far lacking. In this paper, we introduce a topological redundancy measure for labeled directed networks that is formal, computationally efficient, and applicable to a variety of directed networks such as cellular signaling, and metabolic and social interaction networks. We demonstrate the computational efficiency of our measure by computing its value and statistical significance on a number of biological and social networks with up to several thousands of nodes and edges. Our results suggest a number of interesting observations: (1) Social networks are more redundant that their biological counterparts, (2) transcriptional networks are less redundant than signaling networks, (3) the topological redundancy of the C. elegans metabolic network is largely due to its inclusion of currency metabolites, and (4) the redundancy of signaling networks is highly (negatively) correlated with the monotonicity of their dynamics.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8359779PMC
http://dx.doi.org/10.1103/PhysRevE.84.036117DOI Listing

Publication Analysis

Top Keywords

topological redundancy
12
biological social
12
social networks
12
networks
10
computationally efficient
8
social interaction
8
interaction networks
8
directed networks
8
networks redundant
8
signaling networks
8

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!