Background: Phytophthora sojae causes soybean root and stem rot, resulting in an annual loss of 1-2 billion US dollars in soybean production worldwide. A proteomic technique was used to determine the effects on soybean hypocotyls of infection with P. sojae.
Results: In the present study, 46 differentially expressed proteins were identified in soybean hypocotyls infected with P. sojae, using two-dimensional electrophoresis and matrix-assisted laser desorption/ionization tandem time of flight (MALDI-TOF/TOF). The expression levels of 26 proteins were significantly affected at various time points in the tolerant soybean line, Yudou25, (12 up-regulated and 14 down-regulated). In contrast, in the sensitive soybean line, NG6255, only 20 proteins were significantly affected (11 up-regulated and 9 down-regulated). Among these proteins, 26% were related to energy regulation, 15% to protein destination and storage, 11% to defense against disease, 11% to metabolism, 9% to protein synthesis, 4% to secondary metabolism, and 24% were of unknown function.
Conclusion: Our study provides important information on the use of proteomic methods for studying protein regulation during plant-oomycete interactions.
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http://dx.doi.org/10.1186/1477-5956-9-52 | DOI Listing |
Methods Mol Biol
December 2024
Bioprotection Aotearoa, School of Food Technology and Natural Sciences, Massey University, Palmerston North, New Zealand.
This chapter describes the protocol for heterologous expression of Phytophthora proteins in the yeast Pichia pastoris. Two methods to prepare the constructs for expression are described, using two different strains of P. pastoris, as well as methods for protein expression and purification by immobilized metal ion affinity (IMAC).
View Article and Find Full Text PDFMethods Mol Biol
December 2024
Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand.
In this chapter, we describe the design and manufacture of a Lab-on-a-Chip (LoC) device suitable for measuring the μN forces exerted by tips of growing Phytophthora hyphae. LoC describes microfluidic devices, typically made of the polymer polydimethylsiloxane (PDMS), that are increasingly being used to answer fundamental questions in biological, chemical, physical, and medical research. These LoC devices enable the integration of several laboratory functions on small plastic devices that are quick to produce and easy to replicate.
View Article and Find Full Text PDFMethods Mol Biol
December 2024
Division of Plant Sciences, School of Life Sciences, James Hutton Institute, University of Dundee, Dundee, UK.
Endocytosis is an essential cellular process that uptakes substances into cells at the plasma membrane from the extracellular space and plays a major role in plant development and responses to environmental stimuli. Research has shown that plant membrane-resident proteins are endocytosed and transported into plant endosomes in response to pathogen-secreted elicitors. However, there is no conclusive experimental evidence demonstrating how secreted cytoplasmic effectors from oomycetes and fungi enter host cells during infection.
View Article and Find Full Text PDFMethods Mol Biol
December 2024
School of Biological Sciences, University of Canterbury, Christchurch, New Zealand.
Yeast two-hybrid library screening enables the discovery of novel protein-protein interactions. Identifying cytosolic host proteins targeted by host-translocated Phytophthora effector proteins relies on the mRNA amount, quality, and composition used to prepare the yeast two-hybrid cDNA library. Here we describe the steps required for the preparation of a Pinus radiata cDNA library optimized for Phytophthora effector target screening in yeast.
View Article and Find Full Text PDFMethods Mol Biol
December 2024
School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.
Here, we present a protocol for the isolation and detection of Phytophthora oospores directly from soil samples. Our method incorporates a novel technique for isolating Phytophthora oospores using filter pouches and an improved DNA extraction procedure specifically designed for oospores. While we have primarily developed this protocol for detecting P.
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