The photoinduced nonadiabatic decay dynamics of 9H-adenine (hereafter, adenine) in aqueous solution were investigated by surface-hopping simulations within a quantum mechanical/molecular mechanical (QM/MM) framework. The QM subsystem (adenine) was treated at the semiempirical OM2/MRCI level, whereas the MM solvent (water) was described by the TIP3P force field model. Classical molecular dynamics (MD) simulations were used to generate snapshots with different solvent configurations and geometries. For a representative number of these snapshots, the energy minima of the lowest electronic states and the most important conical intersections were located by QM/MM geometry optimization. Surface-hopping QM/MM MD simulations were performed for all selected snapshots to study the nonadiabatic dynamics after photoexcitation, including the two lowest excited singlet states, which are both populated in the initial photoexcitation due to strong vibronic coupling in the Franck-Condon region. The simulations yield ultrafast S(2)-S(1) decay within 40 fs and S(1)-S(0) internal conversion to the ground state within 410 fs, which is consistent with recent experimental results from time-resolved spectroscopy.
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http://dx.doi.org/10.1002/cphc.201001054 | DOI Listing |
Biochemistry
January 2025
Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, China.
Large Stokes shift red fluorescent proteins (LSS-RFPs) are of growing interest for multicolor bioimaging applications. However, their photochemical mechanisms are not fully understood. Here, we employed the QM(XDW-CASPT2//CASSCF)/MM method to investigate the excited-state proton transfer and photoisomerization processes of the LSS-RFP mKeima starting from its cis neutral isomer.
View Article and Find Full Text PDFSpectrochim Acta A Mol Biomol Spectrosc
December 2024
School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, Jilin Provincial Science and Technology Innovation Center of Optical Materials and Chemistry, Jilin Provincial International Joint Research Center of Photo-functional Materials and Chemistry, Changchun 130022, China; State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130021, China. Electronic address:
Neutral radicals have the potential to construct pure organic light-emitting diodes (OLEDs) with internal quantum efficiencies reaching 100%. However, neutral radical luminescent materials with emission wavelengths in the second near-infrared (NIR-II) window are rare. Herein, a serial of neutral donor-bridge-acceptor (D-π-A) type radical derivatives are investigated.
View Article and Find Full Text PDFJ Chem Theory Comput
December 2024
Aix Marseille University, CNRS, ICR, Marseille 13397, France.
Nonadiabatic dynamics simulations complement time-resolved experiments by revealing ultrafast excited-state mechanistic information in photochemical reactions. Understanding the relaxation mechanisms of photoexcited molecules finds application in energy, material, and medicinal research. However, with substantial computational costs, the nonadiabatic dynamics simulations have been restricted to ultrafast timescales, typically less than a few picoseconds, thus neglecting a wide range of photoactivated processes occurring in much longer timescales.
View Article and Find Full Text PDFJ Comput Chem
January 2025
Aix Marseille University, CNRS, ICR, Marseille, France.
Diketopyrrolopyrroles (DPPs) have attracted attention for their potential applications in organic photovoltaics due to their tunable optical properties and charge-carrier mobilities. In this study, we investigate the excited-state dynamics of a DPP dimer using time-dependent density functional theory (TDDFT) and nonadiabatic molecular dynamics simulations. Our results reveal a near-barrierless hydrogen migration state intersection that facilitates ultrafast internal conversion with a lifetime of about 400 fs, leading to fluorescence quenching.
View Article and Find Full Text PDFChemistry
November 2024
University of Warsaw: Uniwersytet Warszawski, Faculty of Chemistry, ul. Pasteura 1, Warsaw, POLAND.
Light-driven molecular rotary motors convert the energy of absorbed light into unidirectional rotational motion and are key components in the design of molecular machines. The archetypal class of light-driven rotary motors is chiral overcrowded alkenes, where the rotational movement is achieved through consecutive cis-trans photoisomerization reactions and thermal helix inversion steps. While the thermal steps have been rather well understood by now, our understanding of the photoisomerization reactions of overcrowded alkene-based motors still misses key points that would explain the striking differences in operation efficiency of the known systems.
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