Summary: Rule-based modeling (RBM) is a powerful and increasingly popular approach to modeling intracellular biochemistry. Current interfaces for RBM are predominantly text-based and command-line driven. Better visual tools are needed to make RBM accessible to a broad range of users, to make specification of models less error prone and to improve workflows. We present RULEBENDER, an open-source visual interface that facilitates interactive debugging, simulation and analysis of RBMs.
Availability: RULEBENDER is freely available for Mac, Windows and Linux at http://rulebender.org.
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Source |
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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3106190 | PMC |
| http://dx.doi.org/10.1093/bioinformatics/btr197 | DOI Listing |
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