Identifying protein β-turns with vibrational Raman optical activity.

Chemphyschem

ETH Zurich, Laboratorium für Physikalische Chemie, Zurich, Switzerland.

Published: April 2011

AI Article Synopsis

  • β-turns are key components of protein secondary structures, and their vibrational Raman optical activity (ROA) signatures have been analyzed through advanced density functional calculations.
  • The study reveals that there are significantly more unique ROA signals for different β-turn types than previously recognized, although some established signatures remain valid for major β-turn types.
  • The research also examines how various amino acid side chains affect these signatures and explores how to distinguish β-turns from other protein structures like α-helices and 3(10)-helices.

Article Abstract

β-turns belong to the most important secondary structure elements in proteins. On the basis of density functional calculations, vibrational Raman optical activity signatures of different types of β-turns are established and compared as well as related to other signatures proposed in the literature earlier. Our findings indicate that there are much more characteristic ROA signals of β-turns than have been hitherto suggested. These suggested signatures are, however, found to be valid for the most important type of β-turns. Moreover, we compare the influence of different amino acid side chains on these signatures and investigate the discrimination of β-turns from other secondary structure elements, namely α- and 3(10)-helices.

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Source
http://dx.doi.org/10.1002/cphc.201001061DOI Listing

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