Nonequilibrium heat flows through a nanorod sliding across a surface.

J Chem Phys

Center for Computational and Molecular Science and Technology, School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia, USA.

Published: March 2011

The temperature-ramped irreversible Langevin equation [A. V. Popov and R. Hernandez, J. Chem. Phys. 134, 244506 (2007)] has been seen to describe the nonequilibrium atomic oscillations of a nanorod dragged across a surface. The nanorod and surface consist of hydroxylated α-Al(2)O(3) layers as was studied earlier by Hase and co-workers [J. Chem. Phys. 122, 094713 (2005)]. The present approach corresponds to the reduced Frenkel-Kontorova-Tomlinson model in which only one element of the vibrational chain representing a surface layer is considered explicitly. The key new concept centers on a separation of the environment into two effective reduced-dimensional baths: an equilibrium bath arising from the thermostated vibrations of the crystal lattice and a nonequilibrium bath arising from driven oscillations at the contact between the nanorod and the surface. The temperature of the latter is defined by the mean energy of a representative atomic oscillator for a given layer. The temporal temperature fluctuations and the dependence of the static part of the temperature on the sliding velocity are close to those found in the MD simulations of Hase and co-workers.

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.3561296DOI Listing

Publication Analysis

Top Keywords

chem phys
8
nanorod surface
8
hase co-workers
8
bath arising
8
surface
5
nonequilibrium heat
4
heat flows
4
nanorod
4
flows nanorod
4
nanorod sliding
4

Similar Publications

Functional gold nanoparticles have emerged as a cornerstone in targeted drug delivery, imaging, and biosensing. Their stability, distribution, and overall performance in biological systems are largely determined by their interactions with molecules in biological fluids as well as the biomolecular layers they acquire in complex environments. However, real-time tracking of how biomolecules attach to colloidal nanoparticles, a critical aspect for optimizing nanoparticle function, has proven to be experimentally challenging.

View Article and Find Full Text PDF

Computationally designed 29-residue peptides yield tetra-α-helical bundles with symmetry. The "bundlemers" can be bifunctionally linked via thiol-maleimide cross-links at their N-termini, yielding supramolecular polymers with unusually large, micrometer-scale persistence lengths. To provide a molecularly resolved understanding of these systems, all-atom molecular modeling and simulations of linked bundlemers in explicit solvent are presented.

View Article and Find Full Text PDF

The behavior of water in concentrated ionic solutions, including supersaturated conditions, is crucial for numerous material and energy conversion processes and fundamental research. All electrolytes whether they "structure-make" or "structure-break" the water structure lead to slower water motion. This study investigates the structure and dynamics of aqueous NaCl solutions across a wide range of concentrations.

View Article and Find Full Text PDF

Attosecond Rescattering of Laser-Assisted Electron-Proton Collision in Coulomb Potential.

J Phys Chem A

January 2025

Department of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia.

This study investigates the motion of an electron in a Coulomb potential driven by an intense linearly polarized XUV laser pulse analyzed using Gordon-Volkov wave functions. The wave function is decomposed into spherical partial waves to model the scattered electron wave packet after the recollision with a proton. This interaction triggers high harmonic generation, producing coherent X-ray pulses with frequencies that are integer multiples of the XUV field.

View Article and Find Full Text PDF

Calprotectin's Protein Structure Shields Ni-N(His) Bonds from Competing Agents.

J Phys Chem Lett

January 2025

State Key Laboratory of Coordination Chemistry, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, China.

The Ni-N(His) coordination bond, formed between the nickel ion and histidine residues, is essential for recombinant protein purification, especially in Ni-NTA-based systems for selectively binding polyhistidine-tagged (Histag) proteins. While previous studies have explored its bond strength in a synthetic Ni-NTA-Histag system, the influence of the surrounding protein structure remains less understood. In this study, we used atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS) to quantify the Ni-N(His) bond strength in calprotectin, a biologically relevant protein system.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!