Discovery of antimicrobial peptides (AMP) is to a large extent based on screening of fractions of natural samples in bacterial growth inhibition assays. However, the use of bacteria is not limited to screening for antimicrobial substances. In later steps, bioengineered "bugs" can be applied to both production and characterization of AMPs. Here we describe the idea to use genetically modified Escherichia coli strains for both these purposes. This approach allowed us to investigate SpStrongylocins 1 and 2 from the purple sea urchin Strongylocentrotus purpuratus only based on sequence information from a cDNA library and without previous direct isolation or chemical synthesis of these peptides. The recombinant peptides are proved active against all bacterial strains tested. An assay based on a recombinant E. coli sensor strain expressing insect luciferase, revealed that SpStrongylocins are not interfering with membrane integrity and are therefore likely to have intracellular targets.
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http://dx.doi.org/10.4161/bbug.1.3.11721 | DOI Listing |
Expert Rev Proteomics
November 2024
Division of Oncological Sciences Knight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Introduction: Given the poor prognosis of patients with TNBC, it is urgent to identify new biomarkers and therapeutic targets to enable personalized treatment strategies and improve patient survival. Comprehensive insights beyond genomic and transcriptomic analysis are crucial to improved outcomes for patients. As proteins are the workhorses of cellular function with their activity primarily regulated by phosphorylation, advanced phosphoproteomics techniques, such as mass spectrometry and antibody arrays, are essential for elucidating kinase signaling pathways that drive TNBC progression and contribute to therapy resistance.
View Article and Find Full Text PDFJ Biotechnol
December 2024
School of Microbiology, University College Cork, Cork T12 K8AF, Ireland; SUSFERM Fermentation Science Centre, University College Cork, Cork T12 K8AF, Ireland. Electronic address:
Yeasts are attractive hosts for the production of heterologous products due to their genetic tractability and relative ease of growth. While the baker's yeast Saccharomyces cerevisiae is a powerful workhorse of the biotechnology industry, the species has metabolic limitations and it is critical that we develop alternative platforms that will facilitate the development of bioprocesses that rely on sustainable feedstocks. In this study, we used synthetic biology tools to construct coumaric acid-producing strains of Kluyveromyces marxianus, a yeast whose physiological traits render it attractive for biotechnology applications.
View Article and Find Full Text PDFChem Rev
September 2024
Biocenter, Johannes Gutenberg University Mainz, 55128 Mainz, Germany.
Over 500 natural and synthetic amino acids have been genetically encoded in the last two decades. Incorporating these noncanonical amino acids into proteins enables many powerful applications, ranging from basic research to biotechnology, materials science, and medicine. However, major challenges remain to unleash the full potential of genetic code expansion across disciplines.
View Article and Find Full Text PDFJ Phys Chem Lett
August 2024
Donostia International Physics Center (DIPC), Donostia, Euskadi 20018, Spain.
Molecular photoswitches undergo a structural transformation upon photoexcitation to interconvert between two or more stable forms. In some cases, the structural rearrangement involves the transition between ring-open and ring-closed forms. In this work, we develop simple guidelines for the design of organic molecules able to undergo photochemical electrocyclization, using electronic structure calculations on dithienylethene (DTE)-based compounds.
View Article and Find Full Text PDFJ Agric Food Chem
March 2024
State Key Laboratory of Animal Nutrition and Feeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, No. 2 West Yuanmingyuan Road, Haidian District, Beijing 100193, China.
Many endeavors in expressing a heterologous gene in microbial hosts rely on simply placing the gene of interest between a selected pair of promoters and terminator. However, although the expression efficiency could be improved by engineering the host cell, how modifying the expression cassette itself systematically would affect heterologous gene expression remains largely unknown. As the promoter and terminator bear plentiful -elements, herein using the mannanase with high application value in animal feeds and the eukaryotic filamentous fungus workhorse as a model gene/host, systematic engineering of an expression cassette was investigated to decipher the effect of its mutagenesis on heterologous gene expression.
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