Cytoscape 2.8: new features for data integration and network visualization.

Bioinformatics

Department of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

Published: February 2011

Unlabelled: Cytoscape is a popular bioinformatics package for biological network visualization and data integration. Version 2.8 introduces two powerful new features--Custom Node Graphics and Attribute Equations--which can be used jointly to greatly enhance Cytoscape's data integration and visualization capabilities. Custom Node Graphics allow an image to be projected onto a node, including images generated dynamically or at remote locations. Attribute Equations provide Cytoscape with spreadsheet-like functionality in which the value of an attribute is computed dynamically as a function of other attributes and network properties.

Availability And Implementation: Cytoscape is a desktop Java application released under the Library Gnu Public License (LGPL). Binary install bundles and source code for Cytoscape 2.8 are available for download from http://cytoscape.org.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3031041PMC
http://dx.doi.org/10.1093/bioinformatics/btq675DOI Listing

Publication Analysis

Top Keywords

data integration
12
network visualization
8
node graphics
8
cytoscape
5
cytoscape features
4
features data
4
integration network
4
visualization unlabelled
4
unlabelled cytoscape
4
cytoscape popular
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!