AI Article Synopsis

  • A modification to the poly-L β-hairpin structure was achieved by mutating specific residues, resulting in a 90° bend that facilitates potential catalytic activity.
  • Six different sequences of the enzyme, focusing on hydrolase activity, were tested and shown to remain soluble and free from aggregation, unlike typical β-hairpins.
  • Despite demonstrating some hydrolytic activity and a specific affinity for certain ligands, the overall catalytic efficiency remained low, highlighting the importance of stereochemistry in the design and folding of protein structures.

Article Abstract

The planar ribbon of the poly-L β-hairpin is modified to a local ~90° bend by mutating a cross-strand pair of residues from LL to DD structure. The bend is furnished aromatic side chains in proximity of acid-base-nucleophile side chains, toward the possibility of catalyzed hydrolysis of an active-site-anchored substrate. Six sequences permuted in putative catalytic side chains are evaluated for activity and variability as hydrolase enzymes. Studies using CD, NMR, spectorofluorometry, ITC, and molecular dynamics establish that the sequences over the bent β-hairpin are by and large aggregation-free folds soluble to at least millimolar concentration, and thus remarkably contrasted with "stickiness" of the canonical poly-L β-hairpin. The heterochiral fold displays cooperative ordering and affinity for acetylcholine, p-nitrophenylacetate, and p-nitrophenylphosphate, presumably as the ligands in its aromatic pocket as a bent hairpin. The fold displays hydrolytic activity against p-nitrophenylacetate and manifests saturation kinetics with respect to substrate concentration. However, the catalysis power is feeble, which remains unaffected by repositioning acid-base-nucleophile side chains. Stereochemistry is proven to be critical in the balance between mutually competitive forces of polypeptide structure involved in guidance of folding or aggregation of the structure. Residue stereochemistry is confirmed in its value as the alphabet for design of protein folds to desired molecular shapes.

Download full-text PDF

Source
http://dx.doi.org/10.1021/jp1062572DOI Listing

Publication Analysis

Top Keywords

side chains
16
poly-l β-hairpin
12
acid-base-nucleophile side
8
fold displays
8
cured "stickiness"
4
"stickiness" poly-l
4
β-hairpin
4
β-hairpin promoted
4
promoted ll-to-dd
4
ll-to-dd mutation
4

Similar Publications

Fine-Tuning of the Sequential Self-Assembly of Entangled Polyhedra by Exploiting the Side-Chain Effect.

Chem Asian J

December 2024

Tokyo College, U-Tokyo Institutes for Advanced Study (UTIAS), The University of Tokyo, Mitsui Link Lab Kashiwanoha 1, FS CREATION, 6-6-2 Kashiwanoha, Kashiwa-shi, Chiba, 277-0882, Japan.

The control of the sequential self-assembly processes of highly entangled (AgL) (n=2,4,6,8) and AgL coordination polyhedra using side-chain effects was studied via the introduction of linear or branched side chains into the tripodal ligands. In addition to changes in the intermediate polyhedral species affording the multi- pathway process, disruption of the kinetic control of the sequential self-assembly was observed, thus demonstrating the utility of steric control for the construction of 3D-entangled molecular materials on the 5 nm scale with high molecular complexity.

View Article and Find Full Text PDF

Reexamining the Enhanced Solubility of Sodium Laurate/Sodium Oleate Eutectic Mixtures.

Langmuir

January 2025

Unilever R&D, 40 Merrit Boulevard, Trumbull, Connecticut 06611, United States.

Mixtures of multiple surfactants that have superior performance to the individual components are highly sought-after commercially. Mixtures with a reduced Krafft point () are particularly useful as they enable applications at lower temperatures. Such an example is the soap maker's eutectic: the mixture of sodium laurate (NaL) and sodium oleate (NaOl).

View Article and Find Full Text PDF

Understanding the impact of oxidative modification on protein structure and functions is essential for developing therapeutic strategies to combat macromolecular damage and cell death. However, selectively inducing oxidative modifications in proteins remains challenging. Herein we demonstrate that [V6O13{(OCH2)3CCH2OH}2]2- (V6-OH) hybrid metal-oxo cluster can be used for selective protein oxidative cleavage and modifications.

View Article and Find Full Text PDF

The fungi have traditionally been used in Asia for food coloring. Unfortunately, the most well-known species, , very often produce mycotoxin citrinin in addition to pigments, which poses a significant problem for the use of pigments in foods. There is a step in pigment biosynthesis where a side chain of five or seven carbons is attached to the tetraketide, the product of polyketide synthase, resulting in the formation of pigments in pairs.

View Article and Find Full Text PDF

Understanding the interplay between the molecular structure of the ionic liquid (IL) subunit, the resulting nanostructure and ion transport in polymerized ionic liquids (PILs) is necessary for the realization of high-performance solid-state electrolytes required in various advanced applications. Herein, we present a detailed structural characterization of a recently synthesized series of acrylate-based PIL homopolymers and networks with imidazolium cations and chloride anions with varying alkyl spacer and terminal group lengths designed for organic solid-state batteries based on X-ray scattering. The impact of the concentrations of both the crosslinker and added tetrabutylammonium chloride (TBACl) conducting salt on the structural characteristics is also investigated.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!