A spectral k-means approach to bright-field cell image segmentation.

Annu Int Conf IEEE Eng Med Biol Soc

Computational Mathematics, University of Waterloo, Ontario, Canada.

Published: March 2011

Automatic segmentation of bright-field cell images is important to cell biologists, but difficult to complete due to the complex nature of the cells in bright-field images (poor contrast, broken halo, missing boundaries). Standard approaches such as level set segmentation and active contours work well for fluorescent images where cells appear as round shape, but become less effective when optical artifacts such as halo exist in bright-field images. In this paper, we present a robust segmentation method which combines the spectral and k-means clustering techniques to locate cells in bright-field images. This approach models an image as a matrix graph and segment different regions of the image by computing the appropriate eigenvectors of the matrix graph and using the k-means algorithm. We illustrate the effectiveness of the method by segmentation results of C2C12 (muscle) cells in bright-field images.

Download full-text PDF

Source
http://dx.doi.org/10.1109/IEMBS.2010.5626380DOI Listing

Publication Analysis

Top Keywords

bright-field images
16
cells bright-field
12
spectral k-means
8
bright-field cell
8
matrix graph
8
bright-field
6
images
6
segmentation
5
k-means approach
4
approach bright-field
4

Similar Publications

Tartrate-resistant acid phosphatase (TRAP) staining is widely used to stain osteoclasts in histological bone sections. The red dye formed by the conventional TRAP enzymatic reaction using naphthol AS-MX (or AS-BI) phosphate and fast red-violet (or garnet) chromogens is readily soluble in alcohol or xylene and requires air-drying prior to cover slipping or the use of an aqueous mounting medium. However, the use of an aqueous mounting medium makes it difficult to store stained specimens for a long time.

View Article and Find Full Text PDF

Semicircular-aperture illumination scanning transmission electron microscopy.

Ultramicroscopy

January 2025

Department of Materials Science and Engineering, School of Materials and Chemical Technologies, Institute of Science Tokyo, 4259 Nagatsuta, Midoriku, Yokohama 226-8503, Japan. Electronic address:

Scanning transmission electron microscopy (STEM) provides high-resolution visualization of atomic structures as well as various functional imaging modes utilizing phase contrasts. In this study we introduce a semicircular aperture in STEM bright field imaging, which gives a phase contrast transfer function that becomes complex and includes both lower and higher spatial frequency contrast transfer. This approach offers significant advantages over conventional phase plate methods, having no charge accumulation, degradation, or unwanted background noise, which are all problematic in the phase plate material.

View Article and Find Full Text PDF

Transmission electron microscopy, especially at cryogenic temperature, is largely used for studying biological macromolecular complexes. A main difficulty of TEM imaging of biological samples is the weak amplitude contrasts due to electron diffusion on light elements that compose biological organisms. Achieving high-resolution reconstructions implies therefore the acquisition of a huge number of TEM micrographs followed by a time-consuming image analysis.

View Article and Find Full Text PDF

Magnetic field-dependent magnetization of highly crystalline FeO magnetic nanoparticles has been carried out to understand surface canting structures at low and room temperatures. The exchange bias () values of ∼18 to 27 Oe at 300 K for three samples prepared from different precursors are observed; and a decrease in value is obtained when the samples are measured at 5 K. However, with a decrease in temperature, coercivity () increases.

View Article and Find Full Text PDF

Deep learning-based morphometric analysis of zebrafish is widely utilized for non-destructively identifying abnormalities and diagnosing diseases. However, obtaining discriminative and continuous organ category decision boundaries poses a significant challenge by directly observing zebrafish larvae from the outside. To address this issue, this study simplifies the organ areas to polygons and focuses solely on the endpoint positioning.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!