Cooperative melting in caged dimers with only two DNA duplexes.

J Am Chem Soc

Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, USA.

Published: December 2010

Small molecule-DNA hybrids with only two parallel DNA duplexes (rSMDH2) displayed sharper melting profiles compared to unmodified DNA duplexes, consistent with predictions from neighboring-duplex theory. Using adjusted thermodynamic parameters obtained from a coarse-grain dynamic simulation, the experimental data fit well to an analytical model.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3657612PMC
http://dx.doi.org/10.1021/ja107232xDOI Listing

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