Effectiveness of 10 polymorphic microsatellite markers for parentage and pedigree analysis in plateau pika (Ochotona curzoniae).

BMC Genet

Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, the Chinese Academy of Sciences, 59 XiGuan Avenue, Xining, Qinghai 810001, PR China.

Published: November 2010

AI Article Synopsis

  • The plateau pika, an underground mammal from the Tibetan plateau, has been studied using a set of 10 genetic markers (microsatellites) to determine parentage.
  • Validation tests showed extremely low error rates in identifying parentage, with high power of discrimination and exclusion, indicating that the markers are very reliable.
  • This genetic tool allows researchers to accurately assign offspring to mothers and identify fathers or relatives, making it useful for various studies on plateau pika populations.

Article Abstract

Background: The plateau pika (Ochotona curzoniae) is an underground-dwelling mammal, native to the Tibetan plateau of China. A set of 10 polymorphic microsatellite loci has been developed earlier. Its reliability for parentage assignment has been tested in a plateau pika population. Two family groups with a known pedigree were used to validate the power of this set of markers.

Results: The error in parentage assignment using a combination of these 10 loci was very low as indicated by their power of discrimination (0.803 - 0.932), power of exclusion (0.351 - 0.887), and an effectiveness of the combined probability of exclusion in parentage assignment of 99.999%.

Conclusion: All the offspring of a family could be assigned to their biological mother; and their father or relatives could also be identified. This set of markers therefore provides a powerful and efficient tool for parentage assignment and other population analyses in the plateau pika.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2994782PMC
http://dx.doi.org/10.1186/1471-2156-11-101DOI Listing

Publication Analysis

Top Keywords

plateau pika
16
parentage assignment
16
polymorphic microsatellite
8
pika ochotona
8
ochotona curzoniae
8
parentage
5
plateau
5
effectiveness polymorphic
4
microsatellite markers
4
markers parentage
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!