A significant fraction (46/108, 43%) of swine isolates of Campylobacter coli but none of 81 isolates of C. coli from turkeys had genomic DNA that was resistant to digestion by MboI, suggesting methylation of adenines at GATC sites. No consistent association was noted between antimicrobial resistance and MboI resistance. Seven swine-associated multilocus sequence typing-based sequence types (STs) were detected among multiple isolates with MboI-resistant DNA. The data suggest host-associated DNA modification system(s) specific for adenine at GATC sites in C. coli from swine.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2976269PMC
http://dx.doi.org/10.1128/AEM.00934-10DOI Listing

Publication Analysis

Top Keywords

gatc sites
12
genomic dna
8
campylobacter coli
8
coli turkeys
8
differences methylation
4
methylation gatc
4
sites genomic
4
dna
4
dna campylobacter
4
coli
4

Similar Publications

Nucleosome dynamics render heterochromatin accessible in living human cells.

bioRxiv

December 2024

Division of Developmental Biology, Eunice Kennedy-Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda MD 20892, USA.

The eukaryotic genome is packaged into chromatin, which is composed of a nucleosomal filament that coils up to form more compact structures. Chromatin exists in two main forms: euchromatin, which is relatively decondensed and enriched in transcriptionally active genes, and heterochromatin, which is condensed and transcriptionally repressed . It is widely accepted that chromatin architecture modulates DNA accessibility, restricting the access of sequence-specific, gene-regulatory, transcription factors to the genome.

View Article and Find Full Text PDF
Article Synopsis
  • The study examines how spontaneous replication errors occur in the E. coli genome despite mechanisms meant to prevent them.
  • Researchers identified specific hotspots for these errors, linked to factors such as DNA stability, sequence types that cause slippage, and structures that can stall DNA replication.
  • Findings suggest that hotspots are associated with certain proteins, gene expression levels, and single-stranded DNA, highlighting complex interactions that affect the accuracy of genetic information transmission.
View Article and Find Full Text PDF

Streptococcus mutans, a key player in dental caries, faces multiple environmental challenges within the oral cavity, including oxidative stress, nutrient scarcity, and acidic pH. To survive and thrive, S. mutans has evolved intricate mechanisms, including the CSP-ComDE quorum sensing system, which coordinates responses to environmental cues.

View Article and Find Full Text PDF

Single-Nucleotide Resolution Mapping of -Methyladenine in Genomic DNA.

ACS Cent Sci

September 2023

School of Public Health, Department of Radiation and Medical Oncology, Zhongnan Hospital of Wuhan University, Wuhan University, Wuhan 430071, China.

-Methyladenine (6mA) is a naturally occurring DNA modification in both prokaryotes and eukaryotes. Herein, we developed a deaminase-mediated sequencing (DM-seq) method for genome-wide mapping of 6mA at single-nucleotide resolution. The method capitalizes on the selective deamination of adenine, but not 6mA, in DNA mediated by an evolved adenine deaminase, ABE8e.

View Article and Find Full Text PDF

DNA methylation events mediated by orphan methyltransferases modulate various cellular processes like replication, repair and transcription. Bacteria and archaea also harbor DNA methyltransferases that are part of restriction-modification systems, which serve to protect the host genome from being cleaved by the cognate restriction enzyme. While DNA methylation has been exhaustively investigated in bacteria it remains poorly understood in archaea.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!