We discuss potential caveats when estimating topologies of 3D brain networks from surface recordings. It is virtually impossible to record activity from all single neurons in the brain and one has to rely on techniques that measure average activity at sparsely located (non-invasive) recording sites. Effects of this spatial sampling in relation to structural network measures like centrality and assortativity were analyzed using multivariate classifiers. A simplified model of 3D brain connectivity incorporating both short- and long-range connections served for testing. To mimic M/EEG recordings we sampled this model via non-overlapping regions and weighted nodes and connections according to their proximity to the recording sites. We used various complex network models for reference and tried to classify sampled versions of the "brain-like" network as one of these archetypes. It was found that sampled networks may substantially deviate in topology from the respective original networks for small sample sizes. For experimental studies this may imply that surface recordings can yield network structures that might not agree with its generating 3D network.
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http://dx.doi.org/10.1016/j.neuroimage.2010.06.018 | DOI Listing |
Protein Sci
February 2025
Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada.
Polymyxins are last-resort antimicrobial peptides administered clinically against multi-drug resistant bacteria, specifically in the case of Gram-negative species. However, an increasing number of these pathogens employ a defense strategy that involves a relay of enzymes encoded by the pmrE (ugd) loci and the arnBCDTEF operon. The pathway modifies the lipid-A component of the outer membrane (OM) lipopolysaccharide (LPS) by adding a 4-amino-4-deoxy-l-arabinose (L-Ara4N) headgroup, which renders polymyxins ineffective.
View Article and Find Full Text PDFNanomicro Lett
January 2025
Fujian Provincial Key Laboratory of Fire Retardant Materials, College of Materials, Xiamen University, Xiamen, 361000, People's Republic of China.
In recent decades, annual urban fire incidents, including those involving ancient wooden buildings burned, transportation, and solar panels, have increased, leading to significant loss of human life and property. Addressing this issue without altering the surface morphology or interfering with optical behavior of flammable materials poses a substantial challenge. Herein, we present a transparent, low thickness, ceramifiable nanosystem coating composed of a highly adhesive base (poly(SSS-co-HEMA)), nanoscale layered double hydroxide sheets as ceramic precursors, and supramolecular melamine di-borate as an accelerator.
View Article and Find Full Text PDFInt J Biol Macromol
January 2025
Università degli Studi "Aldo Moro" di Bari, Dipartimento di Chimica, Via Orabona, 4, 70126 Bari, Italy; CNR NANOTEC - Istituto di Nanotecnologia - Sede Secondaria di Bari c/o Dipartimento di Chimica, Università degli Studi di Bari "Aldo Moro", 70126 Bari, Italy.
Water pollution is a significant worldwide problem, and research studies in this field are still in progress to find strategies for removing pollutants from water. Among the others, adsorption process seems to exhibit several advantages, especially when biomasses are in use. This work proposes biochar from olive pomace pyrolysis for adsorbing contaminants from water, in synergistic combination with TiO, for constituting water-stable and recyclable composite chitosan-based sponges.
View Article and Find Full Text PDFJ Biol Chem
January 2025
T.C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, Maryland, 21218, USA. Electronic address:
Truncated hemoglobins (TrHbs) have an ancient origin and are widely distributed in microorganisms where they often serve roles other than dioxygen transport and storage. In extremophiles, these small heme proteins must have features that secure function under challenging conditions: at minimum, they must be folded, retain the heme group, allow substrates to access the heme cavity, and maintain their quaternary structure if present and essential. The genome of the obligate psychropiezophile Shewanella benthica strain KT99 harbors a gene for a TrHb belonging to a little-studied clade of globins (subgroup 2 of group N).
View Article and Find Full Text PDFAm J Orthod Dentofacial Orthop
February 2025
Department of Orthodontics, Faculty of Dentistry, Çanakkale Onsekiz Mart University, Çanakkale, Turkey.
Introduction: This study aimed to assess the precision of an open-source, clinician-trained, and user-friendly convolutional neural network-based model for automatically segmenting the mandible.
Methods: A total of 55 cone-beam computed tomography scans that met the inclusion criteria were collected and divided into test and training groups. The MONAI (Medical Open Network for Artificial Intelligence) Label active learning tool extension was used to train the automatic model.
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