Transcriptional and epigenetic control of gene expression is critical for cell fate specification, commitment and terminal differentiation during development. However, also regulatory RNAs and RNA-binding proteins have emerged as critical developmental regulators. They control various aspects of mRNA metabolism such as stability, translation, and localization, and similar to some transcriptional regulators, such as PAX5 and MYC, they can affect gene expression on a massive scale. Consistently, defects in many mRNA regulators have been implicated in a number of human disorders, including cancer. Quaking-related (QR) proteins are conserved RNA-binding proteins of the STAR (signal transduction and activation of RNA) family. QR proteins regulate expression of diverse mRNA targets by various mechanisms, play essential roles in a whole host of developmental decisions, and function as tumor suppressors. This review discusses several best-studied members of the QR family, their developmental functions, molecular mechanisms, representative mRNA targets, and their intriguing ability to coordinately control the cell cycle and a wide range of differentiation pathways.
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http://dx.doi.org/10.4161/cc.9.10.11533 | DOI Listing |
PLoS Comput Biol
December 2024
Department of Biomedical Engineering, the Engineering Faculty, Tel Aviv University, Tel-Aviv, Israel.
The P-glycoprotein efflux pump, encoded by the MDR1 gene, is an ATP-driven transporter capable of expelling a diverse array of compounds from cells. Overexpression of this protein is implicated in the multi-drug resistant phenotype observed in various cancers. Numerous studies have attempted to decipher the impact of genetic variants within MDR1 on P-glycoprotein expression, functional activity, and clinical outcomes in cancer patients.
View Article and Find Full Text PDFJ Phys Chem B
December 2024
Department of Chemistry, Indian Institute of Science Education and Research, Dr. Homi Bhabha Road, Pune 411008, India.
Understanding RNA-protein interactions is crucial for uncovering the mechanisms of cellular processes and can provide insights into the basis of various diseases, paving the way for the development of targeted therapeutic interventions. Exposure to stress conditions, such as hypoxia, leads to a drop in intracellular pH, which, in turn, alters the ionization states of amino acid residues and RNA bases, affecting the charge distribution and electrostatic interactions between RNA and proteins. In addition, pH also perturbs the structure and dynamics of proteins via the disruption of H-bonds and ionic interactions.
View Article and Find Full Text PDFSheng Wu Gong Cheng Xue Bao
December 2024
College of Animal Science, Shanxi Agricultural University, Taigu 030801, Shanxi, China.
This study aimed to explore the roles of microRNAs (miRNAs) in the post-transcriptional regulation of cocaine- and amphetamine-regulated transcript (CART) peptide in the bovine hypothalamus and to screen key regulatory miRNAs. Targetscan was used to predict the potential miRNAs binding to 3' untranslated regions (3'UTR). Bioinformatics analysis predicted 7 miRNA binding sites in the bovine 3'UTR, which were bta-miR-377, bta-miR-331-3p, bta-miR-491, bta-miR-493, bta-miR-758, bta-miR-877, and bta-miR-381, respectively.
View Article and Find Full Text PDFSheng Wu Gong Cheng Xue Bao
December 2024
College of Animal Science and Technology, Jiangxi Agricultural University, Nanchang 330045, Jiangxi, China.
Argonaute proteins are active throughout the lifetime in a variety of organisms and they bind to small RNAs (sRNAs) to regulate gene expression. The Argonaute proteins of vertebrates can be classified into two clades: the Ago clade and the Piwi clade. Both clades have N, L1, L2, PAZ, MID and PIWI domains.
View Article and Find Full Text PDFInt J Biol Macromol
December 2024
Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan. Electronic address:
The microaerophilic Gram-negative bacterium H. pylori is associated with various gastric complications and affects nearly half of the global population. Current sero-diagnostic methods for H.
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